Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g2900 ATGAGAGCAGGTAAAGGGAATCTAGAAGATGACGAGTACGAGGAGGAGGAGTTTGGTTCTAAGAAAGAAGGCCCTTCGTCCGCgtctaatagtaataataactcCAGCAAAGATGCAAAAGCTACTGATAAGGCTAGTGCTATAAGATCAAAACATTCAGTGACAGAGCAGCGCAGAAGGAGCAAGATAAATGAGAGATTCCAGATATTGAGGGATCTCATACCTCATAGTGATCAAAAGAGGGATACAGCATCATTCCTATTAGAGGTTATTGAATATGTCCAGTTCTTACAGGAGAAGGTACAAAAGTATGAAGGCTCATATCAGGCTTGGGGTAATGAGCCCACAAAGTTGATGCCATGGagaaacagtcattggcgtgTTCAAAGCTTCGGTCAACCTCAAGCTGTAAAGAATGGTTCTGGTCCAGTATCACCTTTTCCAGGGAAGTTTGATGAAAGCAACATTAGTGTCTCCCCAACTATGCTTAGTGGCTCCCAGAATATGGTTGATCCTGAGCAGAGCAGGGATATTGTCAGCAAAACAGCAGACAGGCAACCTGAGTTCGAAAATAAAGGGATACCTATGCCCATGCCTATGAATGCAAACATGTCAGTTCCTGTTAGAAGTGATGGTGCACTTGCCCATCCTCCACAGGGGCCTGTTTCTGATTCACATTTGACTGAATGTCCAGCCACTAGTGAACAACATAACCTACAGGATGAGCTGACAATTGAAGGAGGAACGATAAACATTTCCAGTGTATACTCCCAAGGAGAAGAGGTTGCCAAATTGATCTtagatatatatttgattagttCAGCTGATGAATCTCTTGGAAACAGCGGGATAAGGCTATTACACAATCTGACTCAAGCGCTTCAGAGTGCTGGTTTGGATCTGTCACAGGCTAGCATCTCAGTTCAAATTAATCTCGGGAAGCGGGCAAACAAAGCACAGGGCTTTGGGGCATCTGCTCCTAAGAATCATGATAATGCCCCTTCTAGCAATCAAGCAATTGCACATTTTAGAGATGCAGGCGAGAAAGAGTGGTTAAAGCTTAAACATTCCGCAAGCTGTGAGCAGCCAGCAAGATTCAAGATTTCAAGAGAGGAtaggccaaacaatttattaGGGATACTGAGAAGACCTGTACAGTTCCTCAAATTCAAGAGCTTGAGGTTTGGAAGGAATGCAACAGATGGAGGAAGTTGCAATAGTGAAGTACATCCTTCAAGGTCCATCCTTTCAAGATTTGGAAGCCCCTCAAAATCTGGCATCTTCATTAGACGTTCAGAGCCACGAAGGTTCAAGCTTCTCAACATTGGGAGACACTGTGGGAAGGAGATTAGGAGACACAAAGTGTTTTCCGTACCAACTACACCGCACCTCCGACGGATCGACACCGTAGAAAACCGTGACGACACTGAGCCGCTGTTCCTTGATGCAGCCGGCGATGGTTGCGAGTTCATCCAAGCAGCGAATCGAGGCAGCGTAGTTTGTCGAGAAGACAACAAGGTAGAGTTGGGATTCTTCGATTTCTTTGAGCAAATGTTGATCGGGGAGGGCGTCGGACCCCATGAAGAGGTTCTTGTGGAAGCTGAAGGTAGTTATACCTGCTTCTTCGAGAGCGGTGGAGAGTTTGTGAGTGAAGTCGAAGGTGTCGTCGTGTCGGTAACTTAG 1683 0.4397 MRAGKGNLEDDEYEEEEFGSKKEGPSSASNSNNNSSKDAKATDKASAIRSKHSVTEQRRRSKINERFQILRDLIPHSDQKRDTASFLLEVIEYVQFLQEKVQKYEGSYQAWGNEPTKLMPWRNSHWRVQSFGQPQAVKNGSGPVSPFPGKFDESNISVSPTMLSGSQNMVDPEQSRDIVSKTADRQPEFENKGIPMPMPMNANMSVPVRSDGALAHPPQGPVSDSHLTECPATSEQHNLQDELTIEGGTINISSVYSQGEEVAKLILDIYLISSADESLGNSGIRLLHNLTQALQSAGLDLSQASISVQINLGKRANKAQGFGASAPKNHDNAPSSNQAIAHFRDAGEKEWLKLKHSASCEQPARFKISREDRPNNLLGILRRPVQFLKFKSLRFGRNATDGGSCNSEVHPSRSILSRFGSPSKSGIFIRRSEPRRFKLLNIGRHCGKEIRRHKVFSVPTTPHLRRIDTVENRDDTEPLFLDAAGDGCEFIQAANRGSVVCREDNKVELGFFDFFEQMLIGEGVGPHEEVLVEAEGSYTCFFESGGEFVSEVEGVVVSVT 560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g2900 560 MobiDBLite consensus disorder prediction 23 41 - -
Sto6g2900 560 CDD bHLH_AtBIM_like 46 122 - -
Sto6g2900 560 MobiDBLite consensus disorder prediction 42 60 - -
Sto6g2900 560 Gene3D - 45 117 IPR036638 GO:0046983
Sto6g2900 560 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 45 119 IPR036638 GO:0046983
Sto6g2900 560 PANTHER BES1-INTERACTING MYC-LIKE PROTEIN 285 350 IPR044295 GO:0003700|GO:0006351|GO:0046983
Sto6g2900 560 PANTHER BES1-INTERACTING MYC-LIKE PROTEIN 1 259 IPR044295 GO:0003700|GO:0006351|GO:0046983
Sto6g2900 560 MobiDBLite consensus disorder prediction 1 60 - -
Sto6g2900 560 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 47 97 IPR011598 GO:0046983
Sto6g2900 560 Pfam Helix-loop-helix DNA-binding domain 49 98 IPR011598 GO:0046983
Sto6g2900 560 SMART finulus 53 103 IPR011598 GO:0046983
Sto6g2900 560 PANTHER TRANSCRIPTION FACTOR BIM2 285 350 - -
Sto6g2900 560 PANTHER TRANSCRIPTION FACTOR BIM2 1 259 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto6g2900 Sto-Chr6 36199853 36210623 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto6g2900 1 327 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G69010 52.439 1.29e-105 318
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Sto6g2900 HLH 1.3e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto6g2900 - - gmx:100816055 469.159
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto6g2900 6 36199853 36210623 Sto6g2900 6 36199853 36210623 ECH