Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g2889 ATGGGTGATAAGGAAAAATTTGAGCCAGATAGAAATGAGGATCCTATGAGTTATTCAACTTGTAATAGTATGCCCTCTGATTGGCGATATGGGGGTGCCAATCTTGCAAATACACCTGTGGGTTTGGTTCCCATGGGGAATTCAATGAACATTAACAGAGGGGATTTCattggttcttcttcttcttcttcctgttcTTCTGCTTCAATGGTGGATTCTTATGGTCCAAACTTCTGGGCCCATGCCACCAGCTCCCAGAATCTGGGATTTTGTGACATTAATGTCCTGAACAATGGTAGTCCATCAAACACATTTGGAATCAGAAAAGATGGTCATGCTGGTTTTTCAAGAGAAATGGGTTGGAATCCTTCTAATTTGATGTTAAAAGGGGATGCTTTCTTACCAAGTGGGCCTGCAGGATTAGTGCTTCCCCAGAGCTTATCTCATCATCAGTTTCCGGCTGATTCGGGTTTCATTCAACGTGCCGCGAGATTCTCGTGCTTCGGCGGAGGGAATTTTGGTGATATTGTGAACTCATTTGGGATTCCTCAATCTATGGTGGGTCTGTTTTCTAAAGAAAGTGAGAAGAATGTTGGTGAAGCTGCAAAAGATGTGTCTCCTATATCTGCTGAGAATCTGGCTGCTATAGGAAACCCTCACAAGAATGAGAGAAGAAGTGAAGGGCTAGCAAAATCTCAAGATGAAGCAAAGTCTGAAGGAGCTCAATCTATCAGTGATGATGGGGCTGGTGGCCAAAATGATTGCCCAATGTTGGAGGGTACAAGTGGAGAGCCTTCTAATAAGGGAATAACctcaaagaaaaggaaaagaaatgggcagGATGCTGATAATGATAAAGCCAATGGAGCACCTGAACTACCAAGTCAAGCTGCGAAGGACAATTCTGAGAGTCGGCCAAAGGGCGAGCAGCAACCGACTTCGACAACCAAGACTTCCGGTAAGAATGCCAAACAAGGGTCTCAAACTTCTGATCCACCAAAGGAGGAATACATACACGTTAGGGCTCGTCGAGGTCAAGCAACAAATAGCCATAGCCTCGCAGAGAGAGTAAGGAGGGAAAAGATTAGTGAAAGAATGAAGTTTCTTCAAGACCTTGTACCTGGATGCAGCAAGGTCACTGGCAAGGCAGTGATGCTAGATGAAATCATTAACTATGTACAGTCGCTTCAACGACAAGTTGAGTTTTTGTCTATGAAACTTGCAACAGTGAATCCACGGCTAGATTTTAATGTCGAAGGACTTCTTAGTAAAGATATTCTTCATCAACGGCCTGCACCGTCATCTGCACTAGGTTTTTCTCCAGAAATGCCAATGGCTTTTCCTGTACTACATCCATCTCAACCAGGACTAGTTCATCCAAATCTTCCTGGCATTGGAAATTCACCCGATATGATTCGGAGAAATGTATATTCGCAATTGGCACCCTTGACTGGAGGATTTAAGGAGCCTAGTCAGCTACCTGATGTATGGGAGGACGAGCTTCACAACGTTGTACAGATGAGCTTTCCGACAACTGCTCCCCTAAGTAGCCAAGATGCAGAGGGTTCTGCTCAAGCAGGACAGATGAAAGTTGAACATGACCTGAAGTTGGAACACAACGCTAGCTTTCCTGGAGCTACACGCATTCACGAGCTACTCTTGTTCATGGCGGCATAG 1677 0.4329 MGDKEKFEPDRNEDPMSYSTCNSMPSDWRYGGANLANTPVGLVPMGNSMNINRGDFIGSSSSSSCSSASMVDSYGPNFWAHATSSQNLGFCDINVLNNGSPSNTFGIRKDGHAGFSREMGWNPSNLMLKGDAFLPSGPAGLVLPQSLSHHQFPADSGFIQRAARFSCFGGGNFGDIVNSFGIPQSMVGLFSKESEKNVGEAAKDVSPISAENLAAIGNPHKNERRSEGLAKSQDEAKSEGAQSISDDGAGGQNDCPMLEGTSGEPSNKGITSKKRKRNGQDADNDKANGAPELPSQAAKDNSESRPKGEQQPTSTTKTSGKNAKQGSQTSDPPKEEYIHVRARRGQATNSHSLAERVRREKISERMKFLQDLVPGCSKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPRLDFNVEGLLSKDILHQRPAPSSALGFSPEMPMAFPVLHPSQPGLVHPNLPGIGNSPDMIRRNVYSQLAPLTGGFKEPSQLPDVWEDELHNVVQMSFPTTAPLSSQDAEGSAQAGQMKVEHDLKLEHNASFPGATRIHELLLFMAA 558
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g2889 558 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 12 532 IPR024097 GO:0006355
Sto6g2889 558 MobiDBLite consensus disorder prediction 295 332 - -
Sto6g2889 558 Gene3D - 343 416 IPR036638 GO:0046983
Sto6g2889 558 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 344 415 IPR036638 GO:0046983
Sto6g2889 558 PANTHER BHLH TRANSCRIPTION FACTOR 12 532 - -
Sto6g2889 558 MobiDBLite consensus disorder prediction 218 234 - -
Sto6g2889 558 MobiDBLite consensus disorder prediction 215 335 - -
Sto6g2889 558 Pfam Helix-loop-helix DNA-binding domain 349 397 IPR011598 GO:0046983
Sto6g2889 558 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 346 396 IPR011598 GO:0046983
Sto6g2889 558 MobiDBLite consensus disorder prediction 269 283 - -
Sto6g2889 558 CDD bHLH_AtBPE_like 336 421 - -
Sto6g2889 558 SMART finulus 352 402 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto6g2889 Sto-Chr6 36118436 36123517 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto6g2889 4 509 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68920 43.678 4.31e-110 335
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Sto6g2889 HLH 7.2e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto6g2889 - - gmx:100797720 713.761
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto6g2889 6 36118436 36123517 Sto6g2889 6 36118436 36123517 ECH