Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g2860 ATGTACGACCAACAGATCACTGGTTTCCCCCAAATGGTTCATTCACACCCACCACCAGAGTTTCATGCGAGTCTTTCTACCACTACCAATACATCAGCTTCTGCTGCTACCTCTGCTTTGTTCATAATGGAAGAAAACTCCAGTAATGGCCATACCCATGTGGTGGAAATGCCCAATCACAATCACTGTGACTCAAATCAGCTACTTCTTTCCAAATGGGACACTTCTGATATgcaaaatcatcatcatcatcatcatcagaatCAAGACCAGCTATTGCCTTACCCTACACCAGATTACCTTAATCTCCTATATAGCTTGCCCACTAGTACTACTGGTTCAATTTCTTCCTTTGTGAACTCATCATCTATCTCTTTTGAAGACCCTTCTGGCCATGGCGGTTTGGCAGAAAGTACAAATGTGTCCCCTGCTTTTGAGGACCCCTTCTTGCATTTGAATCTGCCTGCACATCCTCCAGCACTCAGAGACTTGTTTCAGTCTCTTCCCACCCATGGCTATAACAACATCTTGCCAGCTGCTTCTAAGAATGATcattttatgattttgggtggaGAGGATGATAGAGAAGAAGGAAGTGGGGTTGTTGCATATTTAGATGCAGATGGAATAGGTTTTGGTAATAATGATAATGGAGTCCTCAAGTTTAGCCATGGTGATTTGGGTTCTGTTGGTAGAAAGGGAGGAAGAGGAGGCAAAAGAATCAAACAGGTCAACACTGAAAAACAAAGGAGAGTGGAGTTTAGTAGCAAATTTGATGCCTTAAGAGAACTTATCCCATGCCCCActaagACTGATAGAGCCTCTGTGGTGGGAGATGCCATTGACTACATCCGAATGCTGCTTAGATCAGTGAAGGATCTCAAACTATTAGTGGATAAAAAGAGGCGTGAGAAAAGAATTAGGATCAAGAGACACAAGCTTGAAGAAGATGAgtatgatgaagaagaagaagaaactctAGGGGACATGGAGAGCTGCAACTTGAAGCCACTTGGTGAATCAGATGATCATCATCCTCACCCCTTCAATGGATGCCTAATCAGAAGCTCTTGGCTTAGCAGAAAGTCCAAAGACACTGAGGTTGATGTCAGAATCATTGATGATGAGGTTACAATCAAACTTGTGCagagaaaaaagaagatgaACTGTTTGCTGTATGCTTCTAAGGCTATGGATGAACTTGAGCTGGATCTTCAACATGTTGCTGGTGGCCACATTGGTGATTTCTGCAGTTTCTTATTCAACAGCAAGATATACGAAGGTTCTTCTGTATATGCAAGTGCCATAGCCAACAAGCTTATAGAGGTCATGGATGGAACTTCTCAAGCTGCTTGA 1356 0.4012 MYDQQITGFPQMVHSHPPPEFHASLSTTTNTSASAATSALFIMEENSSNGHTHVVEMPNHNHCDSNQLLLSKWDTSDMQNHHHHHHQNQDQLLPYPTPDYLNLLYSLPTSTTGSISSFVNSSSISFEDPSGHGGLAESTNVSPAFEDPFLHLNLPAHPPALRDLFQSLPTHGYNNILPAASKNDHFMILGGEDDREEGSGVVAYLDADGIGFGNNDNGVLKFSHGDLGSVGRKGGRGGKRIKQVNTEKQRRVEFSSKFDALRELIPCPTKTDRASVVGDAIDYIRMLLRSVKDLKLLVDKKRREKRIRIKRHKLEEDEYDEEEEETLGDMESCNLKPLGESDDHHPHPFNGCLIRSSWLSRKSKDTEVDVRIIDDEVTIKLVQRKKKMNCLLYASKAMDELELDLQHVAGGHIGDFCSFLFNSKIYEGSSVYASAIANKLIEVMDGTSQAA 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g2860 451 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 238 287 IPR011598 GO:0046983
Sto6g2860 451 SMART finulus 244 293 IPR011598 GO:0046983
Sto6g2860 451 Pfam Helix-loop-helix DNA-binding domain 240 287 IPR011598 GO:0046983
Sto6g2860 451 PANTHER TRANSCRIPTION FACTOR BHLH91 45 447 - -
Sto6g2860 451 Gene3D - 235 312 IPR036638 GO:0046983
Sto6g2860 451 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 236 305 IPR036638 GO:0046983
Sto6g2860 451 PANTHER TRANSCRIPTION FACTOR BHLH91 45 447 IPR045895 GO:0006355|GO:0048658
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto6g2860 Sto-Chr6 35841920 35844578 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto6g2860 53 444 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G06170 40.506 4.02e-69 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Sto6g2860 HLH 8e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto6g2860 - - rcu:8262041 290.812