Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g2815 atgcATTCTCTCCAAACCGATCATGAAACCCATTCTCAACCTGCAGCAGTATACACGACATCACCTGTGATCATATCCTTCACCCTCGGAATCCTCATATGTTTCATCATATGTTTCTGCTTCATCTACTTGTGCCGATGTTGTTTCATGAACACCCTCTATTCCTGGGCTTTCCAACGGCATCACTCGAGCAGCGATGCCCAAATCCGCCACCTTAACTCCCAAACCGTCGTGGCATCTCCTCACAGAGGCCTCGATCCTTCGCTGCTTCAAATCTTCCCCACTTTTTCCTATGCATCTGTCAAGGACTTGCCGGCAGGGAAAAACAACAAGAAGTACAGCCTCGAATGTGCCATTTGCTTGTTGGAGTTTCAAGGTGATAGCCTCCTTCGCCTCCTGACCGTGTGCTGCCATGTCTTCCATCAGGAATGTATTGATCTCTGGCTAGGCTCCCATAAGACCTGCCCGGTCTGTCGTACCGACCTCGATTCGTCATCAAACGACGAAAAATGTCCAGAAACTCAAGTGATCAGGGGAACAGGAGATAacgataatgataatgataacaATAATCGTGACGAGACACGTATTGATGTCAAGGATGACGAAGACGATGAGGAATTACAAGTTTCTACGAGTTTGCGAGTGGAAGATAAGAGATTTTCGCGGTCACACTCGACGGGACACTCCATCGTTATGATAAAagacgaagaagaaggaggaggaggaggaagagaaaaTCCTATAAATGATTATGAGAAATATACATTGAGATTGCCGGAACATATTAGGGTTAAGCTTATAAGAGGATCCGGAGGAGGAGGAGCAGGAGGACATAATTATGCAAAAAGTTGTGCAACTTACCAAGAAATGGCAACGCTTTGTAGTAAGTGTTGCTATGCTGAAGCTGTATCAGGGTGTTCTTCCTGTGAGGTTAATGTAAGAGTTTTTTAA 954 0.4266 MHSLQTDHETHSQPAAVYTTSPVIISFTLGILICFIICFCFIYLCRCCFMNTLYSWAFQRHHSSSDAQIRHLNSQTVVASPHRGLDPSLLQIFPTFSYASVKDLPAGKNNKKYSLECAICLLEFQGDSLLRLLTVCCHVFHQECIDLWLGSHKTCPVCRTDLDSSSNDEKCPETQVIRGTGDNDNDNDNNNRDETRIDVKDDEDDEELQVSTSLRVEDKRFSRSHSTGHSIVMIKDEEEGGGGGRENPINDYEKYTLRLPEHIRVKLIRGSGGGGAGGHNYAKSCATYQEMATLCSKCCYAEAVSGCSSCEVNVRVF 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g2815 317 ProSiteProfiles Zinc finger RING-type profile. 117 159 IPR001841 -
Sto6g2815 317 SUPERFAMILY RING/U-box 116 166 - -
Sto6g2815 317 PANTHER RING-H2 FINGER PROTEIN ATL29 8 270 - -
Sto6g2815 317 MobiDBLite consensus disorder prediction 230 249 - -
Sto6g2815 317 MobiDBLite consensus disorder prediction 161 211 - -
Sto6g2815 317 MobiDBLite consensus disorder prediction 230 244 - -
Sto6g2815 317 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 69 166 IPR013083 -
Sto6g2815 317 PANTHER RING FINGER DOMAIN-CONTAINING 8 270 - -
Sto6g2815 317 CDD RING-H2_EL5_like 116 159 - -
Sto6g2815 317 Pfam Ring finger domain 116 159 IPR001841 -
Sto6g2815 317 MobiDBLite consensus disorder prediction 169 184 - -
Sto6g2815 317 SMART ring_2 117 158 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto6g2815 Sto-Chr6 35366821 35367774 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto6g2815 22 275 Rapid Response to Elicitors AT2G35000 31.481 4.43e-36 132
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto6g2815 - - ccaj:109800443 239.58