Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g2797 ATGAAGATTTTCGTGAAGACTTTGAAAGGCACTCACTTCGAAATTGAAGTGAAGCCGGAAGACACGGTTAATGAAGTGAAGAAAAATATAGAGACTGTCCAGGGTTCGGATGTCTATCCTGCTGCACAGCAGATGCTTATTCATCAGGGGAAAGTTCTTAAAGATGGGACTACATTGGAAGAAAATAAAGTAGCTGAAAATAGTTTTGTTGTAATTATGCTTTCTAAGAGTAAGAGCTCATCTGGTGGTGAGGGTTCTACAACTTCAGCTGCAACTTCAGCCAAGACCCCACCGACAAGTGCAGTTCCTACTTCCACCTCAGGTTCAGCAGCACCTCAAGCTCCTGCTGCGACTGTGGCACCGTCACAGTCTGATGTCTATGGGCAGGCTGCATCTAATCTTGTAGCCGGTAGCAACTTGGAGGAAACAGTTCAGCAAATTCTTGATATTGGTGGAGGGAGCTGGGATCGGGATACTATAGTTCGTGCTCTACGTGCTGCTTACAACAATCCTGAGAGAGCTATTGAATATTTGTATTCAGGTATCCCAGAGCAAGCTGAAGTTCCACCTGTGGCCCGAGCTGCTAATCCTCCAGCGCCAGCTCCACAAGCTGCACAACCAGCACAACCCGCACCTGCTCCGACCAGTGGACCTAATGCTAATCCTTTAGACCTCTTTCCCCAGGGCCTTCCCAATGTCAGTTCTGGTGCTGCTGGTGCAGGTACTCTAGATTTTCTGCGCAATAGCCAACAGTTCCAAGCCTTGCGAGCTATGGTGCAGGCAAACCCACAAATACTGCAGCCAATGCTTCAAGAGCTTGGGAAACAAAATCCCCATCTTATGAGATTGATACAAGAGCACCAGTCTGACTTCCTTCGCCTTATAAATGAACCAGTGGAAGGTGGTGAAGGGAACATATTAGGGCAGCTGGCTAATGCCATGCCTGCACAAGTATCTGTCACCGCTGAGGAGCGTCAAGCGATCGAACGTCTTGAAGCAATGGGTTTTGATCGCGCCCTCGTATTGGAAGTATACTTCGCTTGCAACAAAAATGAGGAATTGGCTGCCAACTATCTTTTAGATCACATCCATGAGTTTGAGGATTGA 1107 0.4743 MKIFVKTLKGTHFEIEVKPEDTVNEVKKNIETVQGSDVYPAAQQMLIHQGKVLKDGTTLEENKVAENSFVVIMLSKSKSSSGGEGSTTSAATSAKTPPTSAVPTSTSGSAAPQAPAATVAPSQSDVYGQAASNLVAGSNLEETVQQILDIGGGSWDRDTIVRALRAAYNNPERAIEYLYSGIPEQAEVPPVARAANPPAPAPQAAQPAQPAPAPTSGPNANPLDLFPQGLPNVSSGAAGAGTLDFLRNSQQFQALRAMVQANPQILQPMLQELGKQNPHLMRLIQEHQSDFLRLINEPVEGGEGNILGQLANAMPAQVSVTAEERQAIERLEAMGFDRALVLEVYFACNKNEELAANYLLDHIHEFED 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g2797 368 PANTHER UV EXCISION REPAIR PROTEIN RAD23 1 367 - -
Sto6g2797 368 Gene3D - 316 363 - -
Sto6g2797 368 ProSiteProfiles Ubiquitin domain profile. 1 79 IPR000626 GO:0005515
Sto6g2797 368 SMART uba_6 140 180 IPR015940 -
Sto6g2797 368 SMART uba_6 324 361 IPR015940 -
Sto6g2797 368 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 138 181 IPR015940 -
Sto6g2797 368 Gene3D - 233 299 IPR036353 GO:0003684|GO:0006289|GO:0043161
Sto6g2797 368 Pfam XPC-binding domain 243 298 IPR015360 GO:0003684|GO:0006289|GO:0043161
Sto6g2797 368 Pfam Ubiquitin family 3 76 IPR000626 GO:0005515
Sto6g2797 368 SMART ubq_7 1 75 IPR000626 GO:0005515
Sto6g2797 368 CDD UBA1_Rad23_plant 134 183 - -
Sto6g2797 368 Gene3D - 1 80 - -
Sto6g2797 368 SUPERFAMILY UBA-like 137 192 IPR009060 GO:0005515
Sto6g2797 368 Gene3D - 133 183 - -
Sto6g2797 368 SUPERFAMILY XPC-binding domain 239 305 IPR036353 GO:0003684|GO:0006289|GO:0043161
Sto6g2797 368 MobiDBLite consensus disorder prediction 192 222 - -
Sto6g2797 368 SUPERFAMILY UBA-like 305 366 IPR009060 GO:0005515
Sto6g2797 368 PANTHER EXCISION REPAIR PROTEIN RAD23, PUTATIVE-RELATED 1 367 - -
Sto6g2797 368 TIGRFAM rad23: UV excision repair protein Rad23 1 367 IPR004806 GO:0006289
Sto6g2797 368 SUPERFAMILY Ubiquitin-like 1 80 IPR029071 -
Sto6g2797 368 MobiDBLite consensus disorder prediction 77 117 - -
Sto6g2797 368 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 321 362 IPR015940 -
Sto6g2797 368 MobiDBLite consensus disorder prediction 193 217 - -
Sto6g2797 368 Pfam UBA/TS-N domain 140 178 IPR015940 -
Sto6g2797 368 Pfam UBA/TS-N domain 324 359 IPR015940 -
Sto6g2797 368 CDD Ubl_Rad23 1 74 - -
Sto6g2797 368 PRINTS DNA repair protein Rad23 signature 269 291 IPR004806 GO:0006289
Sto6g2797 368 PRINTS DNA repair protein Rad23 signature 318 334 IPR004806 GO:0006289
Sto6g2797 368 PRINTS DNA repair protein Rad23 signature 335 349 IPR004806 GO:0006289
Sto6g2797 368 PRINTS DNA repair protein Rad23 signature 350 365 IPR004806 GO:0006289
Sto6g2797 368 SMART CBM 241 284 IPR006636 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto6g2797 Sto-Chr6 35187918 35193176 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto6g2797 1 74 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 40.541 1.25e-08 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto6g2797 K10839 - gmx:100809066 527.324
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto6g2797 6 35187918 35193176 Sto6g2797 6 35187918 35193176 ECH