Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g2574 ATGGGAGAAACATGCGGAAGCTGTGGTCCTTGGGTTGACGATATTTTCTGGAACCATTTCAAATTCATCCATTTCGCCCAGCGTCTCCCTTCTGGTTTCGATCAACGCCTTGCAATTCCCAAAAGGTTTTCAGATAATTTGAGAAGGAAATTGCCAGATAATGTGACTCTTAGAGGTCCTGGTGGCGCTTTTTGGAGTGTCAGATTGATGACTATAGAAAACACCTTGTACTTCATGCAAGGTTGGCAACTATTTGCAAAAGATCATTGTTTGAAAGAGAATGATCTCCTGGTCTTTAAGTACAATGGGGAATCACAATTTGATGTTTTAATATTTGACCGGGAGAGCTTCTGTGAGAGTGCTGCTGCTTATTTTGTGGGGAAATCCGAGCCTACAGATAAGAGAAACAGAGATAACTCATTGGAAGAAGTCAATATCCCTTTTAATACCGGTGTTGAATTTGCATCACCGAAGAAATCTGTACGAGGTAACAGTAAAAAGAATCGTAATGCTGCTGTAGAATGTGCTTCCCCTGAGCAAACTAAACGGAAAGCAAGACCTGTAAGATCTAATGCACGTGCCCGACAAGTTAAACCTGTAAGATCTAGTGCACGCGGACAAGAAGTTAAACCTGTAAGATCTAATGCACGTGGGGGAGAAGATAACTTGATTCATgTATTAGATGCCGAACCTTCGGCGAGCGGGAATATGACATATGAAATATTATATGCTTCAAATGGAATGTCCGACACAGAAAACAAGAAAGAGCACGAGCATGCACTCCAATTGGCTCAAGAAATCAACAAAGAGCATGCGGTCGAATTGGCTCAAGCAGCTTGTACTGACGATGGTTTCTACGTAGTCATGCGACCCTCGCATATAAACAAATTCTATATGAAAATCCCTGTTAAGTGGATGGCAGAACGCTTTCCTCGACATTCTGAAGACGTGATATTACGCATGGAACAGACTGAATGGCTTGCCAAATACAACGTTGAACGTGGTGGTCGTGCCGCCGGACTTTCTGGTGGGTGGAGACATTTTGTGCTGGACAATAAGCTGCAAGAATTTGATGTTTGTGTGTTTAAGCCACCAGGTAAAATCAGCACGCCACTAATCATTGAAGTGCAAATATTCAGAGTTAATGAGTAG 1152 0.4236 MGETCGSCGPWVDDIFWNHFKFIHFAQRLPSGFDQRLAIPKRFSDNLRRKLPDNVTLRGPGGAFWSVRLMTIENTLYFMQGWQLFAKDHCLKENDLLVFKYNGESQFDVLIFDRESFCESAAAYFVGKSEPTDKRNRDNSLEEVNIPFNTGVEFASPKKSVRGNSKKNRNAAVECASPEQTKRKARPVRSNARARQVKPVRSSARGQEVKPVRSNARGGEDNLIHVLDAEPSASGNMTYEILYASNGMSDTENKKEHEHALQLAQEINKEHAVELAQAACTDDGFYVVMRPSHINKFYMKIPVKWMAERFPRHSEDVILRMEQTEWLAKYNVERGGRAAGLSGGWRHFVLDNKLQEFDVCVFKPPGKISTPLIIEVQIFRVNE 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g2574 383 Pfam B3 DNA binding domain 287 366 IPR003340 GO:0003677
Sto6g2574 383 Pfam B3 DNA binding domain 31 114 IPR003340 GO:0003677
Sto6g2574 383 CDD B3_DNA 32 113 IPR003340 GO:0003677
Sto6g2574 383 Gene3D - 18 118 IPR015300 -
Sto6g2574 383 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 4 149 IPR044837 -
Sto6g2574 383 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 268 382 IPR044837 -
Sto6g2574 383 CDD B3_DNA 285 380 IPR003340 GO:0003677
Sto6g2574 383 MobiDBLite consensus disorder prediction 157 216 - -
Sto6g2574 383 SMART B3_2 25 115 IPR003340 GO:0003677
Sto6g2574 383 SMART B3_2 285 382 IPR003340 GO:0003677
Sto6g2574 383 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 268 382 - -
Sto6g2574 383 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 4 149 - -
Sto6g2574 383 SUPERFAMILY DNA-binding pseudobarrel domain 23 114 IPR015300 -
Sto6g2574 383 ProSiteProfiles B3 DNA-binding domain profile. 22 115 IPR003340 GO:0003677
Sto6g2574 383 ProSiteProfiles B3 DNA-binding domain profile. 284 382 IPR003340 GO:0003677
Sto6g2574 383 SUPERFAMILY DNA-binding pseudobarrel domain 285 380 IPR015300 -
Sto6g2574 383 Gene3D - 253 383 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto6g2574 Sto-Chr6 32786794 32789870 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto6g2574 1 383 REM Transcription Factor Family AT4G33280 31.500 6.44e-62 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Sto6g2574 B3 3.6e-10 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto6g2574 - - lang:109338042 321.242