LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Sto6g2572	ATGGTGAAATCTGCCGATAATGTTTCTCGTTCTGGCTCTGTGCCGCCTTTCCTGAAGAAATGTTATGAGATGGTGGACGATGAGTCTACGGACTCGCTCATATCTTGGAGCAAAAGCAATGATAGTTTTATCATCTCGGACATGACTGAGTTCTCCGTGCGTTTGCTTCCCAAGTATTTCAAGCACAGCAATTTCTCCAGCTTCATCAGGCAACTCAATATTTATgttttgagttttgacttcATCTTGATAACATGGGAAGGTAGCAATGGTAATATCCCTGGACCTGGCAGCCATGACTTCTTAGCTCTTTTGGAGAATATGCTGTACTGTGGTTATGGAATAGTTGAGGGCTTCAGGAAAACTGATACAGATCGCTGGGAGTTTGCCAATGATGACTTTGTCAGAGGTCAAAAGCATTTACTAAAGAATATATGTCGGAGGAAACATCCACACATTGCAGATCAGCAAAAACCATCACAGCAGCAAGACGACAGTGATATACCGTCtcaagaaattaagaaaaactaCCTTTGGAAAGAAGTTGAGAATCTCAAAACTGATAAAAATGCACTCATGCAGGAGTTGGTTAAACTTGGGCAGCACCAGGAGTCCTCTAAGAACAAGTTGCTGCTCCTGACAGATCGACTTGAAGGAATGGAAACGAATCAGCAACAGATGTTATCGTTCCTAGTTATGGCCATGCAGATCCCTGGGTTCATGGTTCAGCTGCTTCAACCCAAGGAAAACAATTGGCGTATGACTGAGGCAGGCAATATGTTGGAACACAGTATAGATGATCAGCCAGTTCCTTCTGATGGGATGATAATGCAGTATAAACCAGCACTAAGTGGAAAAAGAAAGCCTTTAGTTTCACCATCTCGTGCTTCAGATGAGGAACCAGAACCCGATGTCTATGCTGATGGGTTGAAAGATTATGTCATCAATTCAGACTTTTTGAAAGTACTTATGGATGAACCATTGTGTCAAATTGATAATCATCCTCCATTGATTCTACCGGATTCACCTGATGATAATGCCTGGGAGCAGCTTCTTTTAGATAGTCCTTTTTGGGAAAATGCTGAAAAATCGTATTTGGAAAGTGACAGCCCCACCGAGAGTGAAAGGGATATCGAGTCTACCGAATGTGAAACTCCCAATGAAAATTCCCAAAATTTTGTTGGGTTGATTCCAGAAATGGACAAAACTCAAAAGAGAGGGTTGGAGTTATGTGCATATGGCAAAGGTGTTCATTTGGAGGAGATGGAAAGTTTGGAGTCTCTAACTGAGCAAATTGAACTTTTGGTTTCTGAAGAAAATGAGACTTAG	1329	0.4086	MVKSADNVSRSGSVPPFLKKCYEMVDDESTDSLISWSKSNDSFIISDMTEFSVRLLPKYFKHSNFSSFIRQLNIYVLSFDFILITWEGSNGNIPGPGSHDFLALLENMLYCGYGIVEGFRKTDTDRWEFANDDFVRGQKHLLKNICRRKHPHIADQQKPSQQQDDSDIPSQEIKKNYLWKEVENLKTDKNALMQELVKLGQHQESSKNKLLLLTDRLEGMETNQQQMLSFLVMAMQIPGFMVQLLQPKENNWRMTEAGNMLEHSIDDQPVPSDGMIMQYKPALSGKRKPLVSPSRASDEEPEPDVYADGLKDYVINSDFLKVLMDEPLCQIDNHPPLILPDSPDDNAWEQLLLDSPFWENAEKSYLESDSPTESERDIESTECETPNENSQNFVGLIPEMDKTQKRGLELCAYGKGVHLEEMESLESLTEQIELLVSEENET	442

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Sto6g2572	442	MobiDBLite	consensus disorder prediction	366	392	-	-
	Sto6g2572	442	PANTHER	HEAT STRESS TRANSCRIPTION FACTOR A-8	1	87	-	-
	Sto6g2572	442	PANTHER	HEAT STRESS TRANSCRIPTION FACTOR A-8	118	388	-	-
	Sto6g2572	442	SMART	hsfneu3	13	148	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Sto6g2572	442	Coils	Coil	182	202	-	-
	Sto6g2572	442	MobiDBLite	consensus disorder prediction	366	383	-	-
	Sto6g2572	442	PRINTS	Heat shock factor (HSF) domain signature	17	40	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Sto6g2572	442	PRINTS	Heat shock factor (HSF) domain signature	55	67	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Sto6g2572	442	PRINTS	Heat shock factor (HSF) domain signature	68	80	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Sto6g2572	442	Pfam	HSF-type DNA-binding	17	148	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Sto6g2572	442	SUPERFAMILY	"Winged helix" DNA-binding domain	13	148	IPR036390	-
	Sto6g2572	442	Gene3D	-	9	149	IPR036388	-
	Sto6g2572	442	MobiDBLite	consensus disorder prediction	284	305	-	-
	Sto6g2572	442	PANTHER	HEAT SHOCK TRANSCRIPTION FACTOR	118	388	IPR027725	-
	Sto6g2572	442	PANTHER	HEAT SHOCK TRANSCRIPTION FACTOR	1	87	IPR027725	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Sto6g2572	Sto-Chr6	32770642	32775703	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Sto6g2572	1	363	HSF	AT1G67970	46.070	2.46e-88	272

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	HSF	Sto6g2572		HSF_DNA-bind	1.7e-27	CL0123

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Sto6g2572	K09419		-	gmx:100813694	438.728