LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Sto6g2544	ATGGCTGCTTCGAAGGCGTTAATGGCTTCCTTAAACCACCTGCGTCCACTAACATGCGCCGCTTCATCAGTATCAGCATCTTACCCTGCACGACTTGTGCCTCAATCACCCGACCTTATCAAATGGGTAAGGAAAGAAGGCGGTTTCGTGCACCAGGCGGTGAATATAGCACAAGATGAATCCAAAGGTCTTGGACTTGTGGCTTCAGAAGAAATCCCTAGAGGGAGTGACCTTATTGTTCTTCCACACCACGTACCTTTGAGGTTCGGGTCTCTCGAATCGGGCCATGAGGATGCGCTTGATTCGTTGTTGGTTGATTTGGCTCGCCAAGTTCCTGAGGAACTATGGGCTATGAAATTGGGTTTGAAGCTTCTGCAAGAAAGAGCAAAAGTTGGATCATTTTGGTGGCCGTATATCAGCAATCTCCCAGAAATGTACAGTGTGCCTATCTTCTTTCAAGGGgaggatataaagaacttgcAGTATGCTCCACTTCTTCACCAGGTAAATAAAAGATGTCGTTTCCTTCTTGATTTTGAGAAAGAAGTCAAGCGTGCCCTTCACAATCTGAAACCAGATAAGCATCCCTTTGGTGGCCAAGAAGTAGATGCATCTTCTCTTGGATGGGCAATGTCAGCAGTCTCATCTAGGGCTTTCCGGTTGTATGGTAACAAGCGCTCAGATGGGACCCACATAGACATACCCATGATGCTTCCTCTCATTGATATGTGCAACCATAGTTTCAATCCAAATGCCCAAATTGTTCAGGAACAAAATATTGGTAATTCTAAGATGCAAGTTGTAGCTGAGACAGAAATTAAACAAGATAGTCCCTTATTACTTAACTATGGCTGTTTAAGCAACGATCTTTTTCTTCTTGATTATGGGTTTGTGATACCCTCAAATCCTTATGACTGTATTGAGCTCAAATACGATGGCGCATTTTTGGATGCTGCAAGCATGGCAGCTGGAGTTGCTTCTCCCAACTTTTCAGCACCTGCACCGTGGCAGGAACAAATTTTATCCGAGTTAAATCTAGCGGGAAAAGCTCCTGATCTCAAGGTAAGCTTAGGTGGTCAAGAAATCGTAGAGGGCCGCCTATTGGCAGCTCTGAGAGTACTTCTTGCAAGTGACATGGAGGCTGTGCAGAACTGTGACCTTAGCGCTCTCAAGTCTCTAGCTGCTGAAGCTCCTCTAGGTATTGCAAATGAAGTGGCTGCTTTTCGAACTGCAATTGCTTTGTGTGTCATTGCATTGGGACACTTCCCCACAAAAATAATGGAGGATGAATCACTCTTGAGTAAAGGTGCTTCAGGTTCAACTGAACTAGCCATTCAGTTCAGGATCCAAAAGAAATCTGTGATTATAGATGTTATGAGAGATCTCACAAGGAGGGTAAGACTTCTCTCATCAAAGGAAAAATGCAAAGTTTAA	1434	0.4379	MAASKALMASLNHLRPLTCAASSVSASYPARLVPQSPDLIKWVRKEGGFVHQAVNIAQDESKGLGLVASEEIPRGSDLIVLPHHVPLRFGSLESGHEDALDSLLVDLARQVPEELWAMKLGLKLLQERAKVGSFWWPYISNLPEMYSVPIFFQGEDIKNLQYAPLLHQVNKRCRFLLDFEKEVKRALHNLKPDKHPFGGQEVDASSLGWAMSAVSSRAFRLYGNKRSDGTHIDIPMMLPLIDMCNHSFNPNAQIVQEQNIGNSKMQVVAETEIKQDSPLLLNYGCLSNDLFLLDYGFVIPSNPYDCIELKYDGAFLDAASMAAGVASPNFSAPAPWQEQILSELNLAGKAPDLKVSLGGQEIVEGRLLAALRVLLASDMEAVQNCDLSALKSLAAEAPLGIANEVAAFRTAIALCVIALGHFPTKIMEDESLLSKGASGSTELAIQFRIQKKSVIIDVMRDLTRRVRLLSSKEKCKV	477

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Sto6g2544	477	PANTHER	UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE	6	476	-	-
	Sto6g2544	477	SMART	set_7	52	290	IPR001214	GO:0005515
	Sto6g2544	477	PANTHER	F21J9.27	6	476	-	-
	Sto6g2544	477	Gene3D	set domain protein methyltransferase, domain 1	4	297	-	-
	Sto6g2544	477	Gene3D	-	331	472	IPR036464	-
	Sto6g2544	477	CDD	SET_LSMT	53	298	-	-
	Sto6g2544	477	SUPERFAMILY	SET domain	34	302	IPR046341	-
	Sto6g2544	477	Pfam	SET domain	63	284	IPR001214	GO:0005515
	Sto6g2544	477	ProSiteProfiles	SET domain profile.	52	284	IPR001214	GO:0005515
	Sto6g2544	477	SUPERFAMILY	RuBisCo LSMT C-terminal, substrate-binding domain	294	473	IPR036464	-
	Sto6g2544	477	Pfam	Rubisco LSMT substrate-binding	332	454	IPR015353	-

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TR	SET	Sto6g2544		SET	2.5e-10	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Sto6g2544	-		-	vvi:100249103	734.176