Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g2513 atggaGTCCAACGACGCCGTTCAGCTCTTCcgcctcttcctcttcctcatcaCCGCCATCCCCTTCGCATCCTCCTCCTCGCTCAAGACCGACGCCCAGGCTCTCCTCTCCTTCAAGAAAACCATTCGGAGCGACCCGAACAGAGTCCTGTCCACGTGGCAGCTCAACAGAGACCCCTGCACCTGGTTCGGCGTCACCTGCAGCGCCGCCGCGAGGCGCGTGACTCAGCTCGATCTCAGCGATAACGGCCTCTCGGGGACTTCCTTCACTCCTCTGTCTTCCTTAGACATGTTGGCCGTTCTCAATCTGCACCTCAACTCCTTCCCTGTAAATTCCACTTCTCTCCTCCAGCTTCCCTACAGTTTAACCCACCTCGACCTCTCCTTCTCTAGAATCTCCGGTCCTCTACCCGAGAATCTCTTCTCGCGGTGTCCCAATCTCGAGGTGGTGAATCTCTCTTACAACAACTTCACGGGCTCCCTCCCCGAGGATTTGTTGATCAATTCTAATAAGCTTCGGTCTCTTGATATTTCTTCCAACAACCTGACGGGCTCGATTTCGGGACTGAGGATTGGACGTGATTCCATGCTGGCGCTTCTAGATCTTTCCGGAAACCGCTTGACGGATTCGATTCCGTTTGCTTTGTCGAATTGTACTGGTCTTAAGACTTTGAATTTAGCCGATAATTTGATCGCAGGGGAGATTCCGAAGTCGCTGGGTGAGTTAACAAAATTGGAGGTATTGGATCTCTCTCATAATCAGATCACTGGTTGGATACCTTATGAGTTGGGGAATGTGTGTGGCTACCTGAAAGAGCTTAGACTCTCTGTGAACAACATCTCGGGTTCCATCCCTCCGGCTTTTTCTTCTTGCTCTAACCTCCAGATTCTTGACATGTCTAACAACAACATGTCAGGGCCATTGGTGGATTCGATTTTCCAGAACTTGGGGTCAATTCAGGAGATACATTTGGGGAATAATGCCATCTCGGGACTTTTTCCTTCTTCCATATCTTCGTGTAAGAGCTTGAGGATATTGGACTTGAGCTCGAACAAAATCTCGGGGACTATCCCGCGAGATTTATGTCCCGGAGCGTCGTCACTTGAGGAGCTGAGAATGCCGGATAATCTCATCACGGGAGAGATTCCGTCCGAGCTGTCCAAGTGCTCGCAGTTGAAGAGTATCGATTTCAGTCTGAATTATCTGAATGGCTCGATCCCTCCGGAGCTTGGACAGCTTGAGAATTTGCAGCAGCTGATAGCGTGGTTCAATTCGTTGGAAGGGAAGATCCCTCCGGAGTTGGGTAAATGCAAGAATCTGAAGGATCTTATACTGAATAACAACCATTTAAGCGGCGAGATTCCTGTTGAGTTGTTCAATTGCAGCAATCTTGAGTGGATTTCGCTGACGAGCAACGGATTCACCGGCGAAATACCGCGCGAATTCGGGTCGTTGACGCGGCTGGCAGTTTTGCAGCTTGGAAACAACAGCCTGGCAGGGGAGATACCAGGAGAGTTGGCAAATTGCAGCACTTTGGTTTGGTTGGATTTGAACAGTAACAAGCTCACAGGAGAGATCCCGCCAAGACTAGGAAGGCAGTTAGGAGCCAAATCGTTGTCTGGGATTCTCTCAGGAAACACATTGGTGTTTGTTAGAAACGTGGGGAACTCATGCAAAGGTGTTGGTGGTTTGTTAGAATTCTCTGGAATTAGACCGGAAAGGCTTCTTCAGGTGCCAACATTGAGGACTTGTGACTTCACTAGGCTGTATTCTGGTCCTGTCTTGAGCTTGTTCACCAAGTACCAGACCCTGGAGTATCTAGATCTTTCTTACAACGAGCTTCGCGGCAAAATCCCGGAAGAATTCGGGGGAATGGTGGCTTTGCAAGTTCTTGAACTGTCTCACAACCAGTTGTCCGGGGAGATCCCCTCATCACTTGGTCAGCTCAAGAATTTGGGTGTGTTTGATGCATCACATAATAGGCTGCAAGGTCATATCCCAGACTCATTCtcaaacttgtcatttttggtgCAAATTGATCTGTCCAACAATGAGTTAACTGGGCAGATTCCATCTAGAGGACAACTCAGTACACTTCCAGCTAGCCAGTACGCGAACAACCCGGGTCTTTGCGGCGTTCCGTTGCCCGAATGCCAGACCGAAAACACCCAACCGACGACGAATCCGAGTGCAAATGATGATGGAAAAGGAGGCCACAAACCAGCAACTGCATCATGGGCAAACAGCATTGTGTTGGGAGTCCTCATCTCCATTGCTTCTGTATGCATCTTAATCGTGTGGGTGATCGCCATGCGCGCAAGGAGGAAGGAGGCAGAGGAAGTGAAGATGCTGAGTAGCTTGCAAGCATCTCACGCTGCCACGACATGgaaaattgacaaagagaaagaGCCTTTGAGCATAAACGTGGCAACATTTCAGAGACAACTAAGGAAGCTCAAGTTCTCACAATTGATCGAGGCAACAAATGGCTTCTCAGCAGCTAGCCTCATAGGGTGTGGTGGGTTTGGAGAAGTGTTCCGAGCTACCCTCAAGGACGGCTCCAGCGTCGCCATCAAGAAACTCATCCGACTGAGCTGCCAGGGCGACCGAGAATTCATGGCAGAGATGGAAACCTTGGGGAAGATCAAGCACAAGAATCTCGTGCCTCTGTTGGGATACTGTAAAGTAGGTGAAGAGAGGCTGCTAGTTTACGAGTACATGGAATATGGAAGCCTAGAAGAAATGCTCCACGGGAGAACAAAGACACGAGACCGGAGAAATCTGACTTGGGAAGAGAGGAAAAAGATCGCCCGAGGAGCGGCCAAAGGACTCTGTTTCCTGCACCACAATTGCATCCCACACATAATCCACCGCGACATGAAATCAAGCAATGTGCTTCTCGACCACGAAATGGAAGCTCGAGTCTCCGATTTCGGCATGGCGAGACTAATAAGCGCCCTGGACACTCATCTAAGTGTGAGCACACTGGCTGGAACACCAGGATACGTCCCTCCAGAGTACTACCAAAGCTTCAGGTGCACAGCAAAAGGAGATGTCTATTCATTCGGTGTTGTCATGCTTGAGCTTCTCACGGGGAAACGTCCCACTGATAAGGAGGATTTTGGTGACACAAACTTGGTGGGATGGGCCAAGATGAAGGTACGTGAAGGGAAACAAATGGAAGTGATCGATTCTGAGTTGCTTATGGTGACAAAAGGAACGGATGAAGCAGAAGTTAAAGAAGTAGTGGCCATGCTCAGAGAACTCATGCCTGGATCAGCTGATGGAAGCAGCAATAGTGCTTGA 3306 0.4873 MESNDAVQLFRLFLFLITAIPFASSSSLKTDAQALLSFKKTIRSDPNRVLSTWQLNRDPCTWFGVTCSAAARRVTQLDLSDNGLSGTSFTPLSSLDMLAVLNLHLNSFPVNSTSLLQLPYSLTHLDLSFSRISGPLPENLFSRCPNLEVVNLSYNNFTGSLPEDLLINSNKLRSLDISSNNLTGSISGLRIGRDSMLALLDLSGNRLTDSIPFALSNCTGLKTLNLADNLIAGEIPKSLGELTKLEVLDLSHNQITGWIPYELGNVCGYLKELRLSVNNISGSIPPAFSSCSNLQILDMSNNNMSGPLVDSIFQNLGSIQEIHLGNNAISGLFPSSISSCKSLRILDLSSNKISGTIPRDLCPGASSLEELRMPDNLITGEIPSELSKCSQLKSIDFSLNYLNGSIPPELGQLENLQQLIAWFNSLEGKIPPELGKCKNLKDLILNNNHLSGEIPVELFNCSNLEWISLTSNGFTGEIPREFGSLTRLAVLQLGNNSLAGEIPGELANCSTLVWLDLNSNKLTGEIPPRLGRQLGAKSLSGILSGNTLVFVRNVGNSCKGVGGLLEFSGIRPERLLQVPTLRTCDFTRLYSGPVLSLFTKYQTLEYLDLSYNELRGKIPEEFGGMVALQVLELSHNQLSGEIPSSLGQLKNLGVFDASHNRLQGHIPDSFSNLSFLVQIDLSNNELTGQIPSRGQLSTLPASQYANNPGLCGVPLPECQTENTQPTTNPSANDDGKGGHKPATASWANSIVLGVLISIASVCILIVWVIAMRARRKEAEEVKMLSSLQASHAATTWKIDKEKEPLSINVATFQRQLRKLKFSQLIEATNGFSAASLIGCGGFGEVFRATLKDGSSVAIKKLIRLSCQGDREFMAEMETLGKIKHKNLVPLLGYCKVGEERLLVYEYMEYGSLEEMLHGRTKTRDRRNLTWEERKKIARGAAKGLCFLHHNCIPHIIHRDMKSSNVLLDHEMEARVSDFGMARLISALDTHLSVSTLAGTPGYVPPEYYQSFRCTAKGDVYSFGVVMLELLTGKRPTDKEDFGDTNLVGWAKMKVREGKQMEVIDSELLMVTKGTDEAEVKEVVAMLRELMPGSADGSSNSA 1101
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g2513 1101 Gene3D Transferase(Phosphotransferase) domain 1 907 1094 - -
Sto6g2513 1101 SUPERFAMILY L domain-like 53 265 - -
Sto6g2513 1101 SUPERFAMILY RNI-like 200 529 - -
Sto6g2513 1101 Pfam Protein tyrosine and serine/threonine kinase 835 1038 IPR001245 GO:0004672|GO:0006468
Sto6g2513 1101 Gene3D Phosphorylase Kinase; domain 1 789 906 - -
Sto6g2513 1101 SMART LRR_typ_2 485 509 IPR003591 -
Sto6g2513 1101 SMART LRR_typ_2 316 339 IPR003591 -
Sto6g2513 1101 SMART LRR_typ_2 144 168 IPR003591 -
Sto6g2513 1101 SMART LRR_typ_2 242 265 IPR003591 -
Sto6g2513 1101 SMART LRR_typ_2 413 437 IPR003591 -
Sto6g2513 1101 SMART LRR_typ_2 438 461 IPR003591 -
Sto6g2513 1101 SMART LRR_typ_2 625 649 IPR003591 -
Sto6g2513 1101 SMART LRR_typ_2 340 364 IPR003591 -
Sto6g2513 1101 Gene3D - 543 599 - -
Sto6g2513 1101 PANTHER LEUCINE-RICH RECEPTOR-LIKE KINASE FAMILY PROTEIN 22 1089 - -
Sto6g2513 1101 ProSitePatterns Protein kinases ATP-binding region signature. 837 860 IPR017441 GO:0005524
Sto6g2513 1101 ProSiteProfiles Leucine-rich repeat profile. 244 265 IPR001611 GO:0005515
Sto6g2513 1101 PRINTS Leucine-rich repeat signature 172 185 - -
Sto6g2513 1101 PRINTS Leucine-rich repeat signature 242 255 - -
Sto6g2513 1101 Pfam Leucine rich repeat N-terminal domain 29 68 IPR013210 -
Sto6g2513 1101 ProSitePatterns Serine/Threonine protein kinases active-site signature. 955 967 IPR008271 GO:0004672|GO:0006468
Sto6g2513 1101 MobiDBLite consensus disorder prediction 717 740 - -
Sto6g2513 1101 Gene3D Ribonuclease Inhibitor 30 142 IPR032675 -
Sto6g2513 1101 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 22 1089 - -
Sto6g2513 1101 SMART LRR_sd22_2 71 94 - -
Sto6g2513 1101 SMART LRR_sd22_2 242 263 - -
Sto6g2513 1101 SMART LRR_sd22_2 291 318 - -
Sto6g2513 1101 SMART LRR_sd22_2 649 675 - -
Sto6g2513 1101 SMART LRR_sd22_2 169 191 - -
Sto6g2513 1101 SMART LRR_sd22_2 340 373 - -
Sto6g2513 1101 ProSiteProfiles Protein kinase domain profile. 831 1101 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sto6g2513 1101 SUPERFAMILY Protein kinase-like (PK-like) 812 1067 IPR011009 -
Sto6g2513 1101 CDD STKc_IRAK 837 1087 - -
Sto6g2513 1101 Pfam Leucine rich repeat 597 638 IPR001611 GO:0005515
Sto6g2513 1101 Pfam Leucine rich repeat 462 522 IPR001611 GO:0005515
Sto6g2513 1101 Pfam Leucine rich repeat 310 353 IPR001611 GO:0005515
Sto6g2513 1101 Pfam Leucine rich repeat 121 182 IPR001611 GO:0005515
Sto6g2513 1101 Pfam Leucine rich repeat 197 255 IPR001611 GO:0005515
Sto6g2513 1101 SUPERFAMILY L domain-like 568 715 - -
Sto6g2513 1101 SMART serkin_6 831 1090 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sto6g2513 1101 MobiDBLite consensus disorder prediction 717 733 - -
Sto6g2513 1101 Pfam Brassinosteroid receptor island domain 540 598 IPR045381 -
Sto6g2513 1101 Gene3D Ribonuclease Inhibitor 169 718 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto6g2513 Sto-Chr6 32090920 32094306 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto6g2513 35 1076 Receptor kinase-like Gene Family AT1G55610 49.306 0.0 974
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-1 Sto6g2513 PK_Tyr_Ser-Thr 4.5e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto6g2513 - - gmx:100789959 1801.95