Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g2498 ATGCTCCATCGATCGCTGCCGAAAGACTGGGAAACAACTGGTTGGAGTCTTCGGCTTTTGTGCTCGCCGGAGGTGTCGCAAACAGTCACTGCTGATGATGAGCCTCCAAATGATTCTCGCCGACGTTTTGACAAAGCTGTACATTCTTATGATCAgGCACGGGAAAAGTTTGTATCCTTGAAGAAGAATACACGAGGAGACATAGTTGCTGAATTTGAAGAGGATCTTCAAAATTCAAAGTCAGCATTTGAGAAAAGTCGCTTCAATCTAGTAAACTCACTCATGAACATTGAAGTGAAAAAGAAGTACGAGTTTTTGGAGTCCTTTAGTGCAATAATGGATGCTCAGCTAAGATACTTCAAGCTGGGTTATGACTTACTTAGCCAAATGGAGCCCTATATTCACCAGGTATTAACATATGCACAACAATCTAAAGAGCTGGCTAATGTTGAGCAAGATAAGCTTGCAAAACGGATCCAAGAATATAGAACACAAGCTGAGTTGGACAATATACGAGCTTCAAGCAATGCAGATTCTTTATCTGGTGCTGATGGCAACCGGGTTGTTGGTTTGAACTCATATAAAAGCTCTGAAGCAGTGATCCAGTCTGCACCCAAAGGTGAGGTTCAAACAATTAAACAGGGCTATTTGCTAAAACGATCATCTAGATTGCGAGGAGATTGGAAGCGGAGGTTCTTTGTACTTGACAGCCAAGGGAATTTATTTTACTACAGAGTGAAGGGAGCAAAACCTATGGGCACTCAATCATACAATTATACTCGTTCAAATGAACAAAACAGTGGCATGTTTGGTAGATTCCGCTCTAGGCACAACAGGGCAGCATCCCTAAATGAAGAAATTCTGGGTTCTCGTGCAGTTGATCTATGCACATCGACTATAAAAATGGATGCGGAGGATACAGATCTTCGACTTTGCTTCCGCATAATCTCTCCATCGAAAACATATACACTGCAGGCTGAAAATGAAGCAGATAGGATGGACTGGGTAAACAAAATTACCGGAGCTATCACATCACTTTTTAATTCTCAGTTTCTTCAACAGCCTCATCGCATTACATTGCATCTAGAAAATGATAACTCAGCCACTTCTGCTTCATGGAATAGCCAATCACAGCATAGGCATGGATCTTTGACAGAAGACATGAATTCCAAGGAAGTGGATAGTGTCTCTAAGATTTTATGGGGAATTCCTGGAAATGATAAGTGTGCTGAGTGTAGTGCTACTGAACCAGACTGGGCATCTCTTAACCTTGGCATTTTGCTATGTATTGAATGCTCTGGTGTCCACCGAAATCTTGGTGTTCACATCTCAAAGGTGAGATCTATAACATTAGATGTCAAGGTTTGGGAACCTACCATTTTGGACTTGTTCCGAAACTTGGGTAATGCTTATTGTAACTTGGTCTGGGAGGGATTGCTACATGATGGGGAAAGAAAGGGTGAATTAAATGTGCCGACCAAACCATGCTCCACAGATGCCTTTCAAGACAAGGAAAAGTACATCCAAGCAAAGTACATAGAGAAATCACTAATCATCAAAGAGTCTATACCTGGGAATCCTTCTCGTGCTGTAAGGGTCTGGCAAGCGGTTCAGGCCATAAATATACGAGAAGTGTATCGCCTCATTGTCACATCAGATCCGAATCTGGTAAACACCAAATATGATGATGTACTTGGCCATGCTGATGCAGAAAACATAGATTTCGGATGTCAAACAACTGATAACCGGCAAGGTCCTGAAGCCCCTAATAACCCTGTGAGCAGTCTCGAAGGTTGTTCACTGTTGCATTTGGCATGCCATTCTAACAGTTCACTAATGGCTGAGTTGTTGCTCCAATTTGGTGCTGATGTAAATATGCGTGACTACCATGGAAAGACTCCCTTGCACCATTGCATCTCTAGTGGAAAAAATGCATTGGCAAAGTTTCTACTTAGAAGGGGTGCAAGACCATCAATCAAAGACGGCGAAGGATTCTCTGCACTCGAAAGAGCGATGGAAATGGGAGCAATAACTGATGAAGAGCTATTTATTTTGCTTGCTGCATCTGAGTAG 2073 0.4231 MLHRSLPKDWETTGWSLRLLCSPEVSQTVTADDEPPNDSRRRFDKAVHSYDQAREKFVSLKKNTRGDIVAEFEEDLQNSKSAFEKSRFNLVNSLMNIEVKKKYEFLESFSAIMDAQLRYFKLGYDLLSQMEPYIHQVLTYAQQSKELANVEQDKLAKRIQEYRTQAELDNIRASSNADSLSGADGNRVVGLNSYKSSEAVIQSAPKGEVQTIKQGYLLKRSSRLRGDWKRRFFVLDSQGNLFYYRVKGAKPMGTQSYNYTRSNEQNSGMFGRFRSRHNRAASLNEEILGSRAVDLCTSTIKMDAEDTDLRLCFRIISPSKTYTLQAENEADRMDWVNKITGAITSLFNSQFLQQPHRITLHLENDNSATSASWNSQSQHRHGSLTEDMNSKEVDSVSKILWGIPGNDKCAECSATEPDWASLNLGILLCIECSGVHRNLGVHISKVRSITLDVKVWEPTILDLFRNLGNAYCNLVWEGLLHDGERKGELNVPTKPCSTDAFQDKEKYIQAKYIEKSLIIKESIPGNPSRAVRVWQAVQAINIREVYRLIVTSDPNLVNTKYDDVLGHADAENIDFGCQTTDNRQGPEAPNNPVSSLEGCSLLHLACHSNSSLMAELLLQFGADVNMRDYHGKTPLHHCISSGKNALAKFLLRRGARPSIKDGEGFSALERAMEMGAITDEELFILLAASE 690
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g2498 690 Gene3D Arf GTPase activating protein 373 522 IPR038508 -
Sto6g2498 690 Pfam Ankyrin repeats (3 copies) 590 661 IPR002110 GO:0005515
Sto6g2498 690 MobiDBLite consensus disorder prediction 369 390 - -
Sto6g2498 690 ProSiteProfiles Ankyrin repeat region circular profile. 597 628 - -
Sto6g2498 690 SUPERFAMILY Ankyrin repeat 595 683 IPR036770 -
Sto6g2498 690 PRINTS HIV Rev interacting protein signature 406 425 IPR001164 GO:0005096
Sto6g2498 690 PRINTS HIV Rev interacting protein signature 425 442 IPR001164 GO:0005096
Sto6g2498 690 PRINTS HIV Rev interacting protein signature 448 469 IPR001164 GO:0005096
Sto6g2498 690 ProSiteProfiles PH domain profile. 210 344 IPR001849 -
Sto6g2498 690 SMART arf_gap_3 394 525 IPR001164 GO:0005096
Sto6g2498 690 Pfam BAR domain of APPL family 27 146 - -
Sto6g2498 690 SUPERFAMILY ArfGap/RecO-like zinc finger 395 518 IPR037278 -
Sto6g2498 690 Coils Coil 145 165 - -
Sto6g2498 690 CDD PH_ACAP 213 348 - -
Sto6g2498 690 Pfam PH domain 212 343 IPR001849 -
Sto6g2498 690 PANTHER CENTAURIN/ARF 24 686 IPR045258 GO:0005096
Sto6g2498 690 SUPERFAMILY PH domain-like 211 357 - -
Sto6g2498 690 ProSiteProfiles ARF GTPase-activating proteins domain profile. 394 525 IPR001164 GO:0005096
Sto6g2498 690 SMART ANK_2a 597 626 IPR002110 GO:0005515
Sto6g2498 690 SMART ANK_2a 630 659 IPR002110 GO:0005515
Sto6g2498 690 Gene3D - 571 689 IPR036770 -
Sto6g2498 690 SMART PH_update 211 346 IPR001849 -
Sto6g2498 690 Pfam Putative GTPase activating protein for Arf 397 518 IPR001164 GO:0005096
Sto6g2498 690 SUPERFAMILY BAR/IMD domain-like 26 233 IPR027267 -
Sto6g2498 690 Gene3D - 210 348 IPR011993 -
Sto6g2498 690 ProSiteProfiles Ankyrin repeat profile. 630 662 IPR002110 GO:0005515
Sto6g2498 690 ProSiteProfiles Ankyrin repeat profile. 597 629 IPR002110 GO:0005515
Sto6g2498 690 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD2 24 686 - -
Sto6g2498 690 MobiDBLite consensus disorder prediction 369 383 - -
Sto6g2498 690 Gene3D Arfaptin homology (AH) domain/BAR domain 22 168 IPR027267 -
Sto6g2498 690 ProSiteProfiles Ankyrin repeat region circular profile. 630 661 - -
Sto6g2498 690 CDD ArfGap 398 512 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto6g2498 Sto-Chr6 31885232 31916465 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto6g2498 385 512 C2H2 Transcription Factor Family AT3G07940 38.931 1.59e-18 84.3