Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g2442 ATGTCTCAGACATCCAGGGTCCCACTTGCCATACAGTCTATCAAATCAATACCACCTGAGTTCAAGTTTACAGATAATCCAACCCCTGATTTTATGGAAAAACATGGAAATGATAAAGAGGGAAGCACTGATGTTATAGTGTCAAATAATCCTGAAGATGGTGCCATTGGAAGGAAAGTTTCCGAGGAACTTCAGGACTGTACTCGTGACATGTATTTCATCAATGAGGATTCACCATATGGTGAAAAAACAATATCACTAGAAAGTAGATCTTCAATTGGTGATGAAGAAGTAGAATCTGTTCCTTTGCCACTCCCATCAATCTCAAAATCCTCTAGGGAAAGCAGATGGAGTGATACAACATCTTATGCTTCAAAAAAGAAGCTTCAATCTTGGTTTCAACTTCCAAATGGGAACTGGGAGCTGGGGAATATAATATCTACTACTGGAACTGAATCTGTTATTTCACTGTCTGAGGGGAAgGTTTTAAAGGTGAAAAGTGAAAGTTTGGTTCCTGCAAATCCTGATATTCTTGATGGAGTGGATGACCTTATGCAACTTAGTTATTTAAATGAACCGTCTGTTTTATACAATTTGCAACGTAGATACAACCAAAATATGATTTATACAAAAGCAGGTCCAGTTTTGGTTGCTGTAAATCCCTTCAAAAAAGTTCCTTTGTatggaaatgattatattgaAGCATACAAACGTAAAGCAATTGAAAGTCCTCATGTATATGCCATTGCACATATGGCCATCAGGGAAATGATACGAGATGAAGTAAATCAATCTATTATTATAAGTGGTGAAAGTGGAGCAGGGAAGACAGAGACAGCAAAGATAGCAATGCAGTACTTGGCTGCCCTTTGTGGTGGAAGTGGAATAGAGTATGAGATATTAAAGACTAATCCAGTACTAGAAGCCTTTGGTAATGCAAAAACATTGAGAAATGACAACTCAAGTCGTTTTGGAAAGCTCATTGAGATACACTTCAGTGAGACTGGAAAAATCTCTGGTGCTAATATTCAAACATGTAAGTTTACCACTGAATCTAGAGTAGTCCAATGCAATGAAGGGGAAAGgtcatatcatatattttatcaGCTATGTGCTGGGGCACCACCTTCTCTTAGGGAGAAGCTGAATCTACTAAATGTGGAAGACTATAAATATCTGAGGCAGAGCAATTGTTATTCGATTACTGGTGTCAATGATGCAGAAGAATTTTGCATAGTAATGGAAGCTCTGGATGTCGTCCACATCGGTAAAGAAGATCAGGAGAATGTATTTGCAATGCTTGCTGCAGTATTATGGTTTGGAAACATATCTTTTACGGTGGTTGATAATGAAAATCATGTTCAAGTTATAGAAGATGAGGCTCTGTTCACGGTTGCTAAATTGATAGGCTGTGACATTGGAGATCTCAAGATTACTTTATCAACTCGCAAAATGAAAGTTGGTAATGATAACATTGTCCAGAAGTTGACACTATCACAGGCTATTGATGCAAGAGATGCTATGGCAAAGTCAATATATGCTTGTCTGTTCGATTGGATAATTGAGCAAATAAACAAATCACTTGCTGTTGGCAAAAGGCGTACCGGAAGATCTATCAGTATTCTAGATATCTATGGCTTTGAATCGTTTGATAGGAATAGTTTTGAGCAATTCTGCATTAATTATGCAAATGAGAGATTGCAGCAACACTTCAATCGTCATTTATTCAAGTTAGAACAGGAGGAATATATACAAGATGGCATTGATTGGGCAAAAGTTGAATTTGAAGACAACCAAGACTGCCTTAATCTTTTTGAAAAGAAACCACTGGGATTATTGTCTCTGTTAGACGAAGAATCCACTTTTCCTAATGGCACAGATTTGACGTTTGCTAACAAGCTTAAGCAGCATTTGAGTTCTAATTCAAGTTTCAGAGGAGAGAGAGGCAAAGCCTTTACTGTGTGTCATTATGCTGGGGAGGTCACCTATGATACCACAGGATTTCTGGAAAAAAATAGGGATCTACTGCACGTGAATTGTATTCAACTTCTATCCTCATGCACATGTCATCTTCCTCAGATATTTGCATCCAATATGCTTACACAGTCTGAGAAGCCTATTGTCGGTCCCTTACACAAGTCAGGTGGAGCTGATTCCCAAAAGCTAAGTGTTGCAACAAAATTCAAGAGTCAACTGTTCCTATTGATGCAACGTTTGGAGAGCACCACTCCACATTTTATTCGATGTATTAAGCCCAATAACCTCCAGTCACCAGGATTATATGAGCAAGGTCTTGTACTACAGCAGCTGAAATGTTGTGGGGTCCTGGAAGTTGTTCGAATATCAAGATCAGGCTTTCCTACTAGAATGTCCCACCAAAAGTTTGCCAGAAGATATGGTTTTCTTCTCCTTGAAAATGCTGCTTCCCAGGATCCACTCAGTGTATCAGTTGCAATTCTTCAGCAGTTTAATATTTTGCCAGAGATGTATCAAGTTGGTTACACGAAATTATTTTTCCGAACAGGACAGATTGGAGTACTTGAAGATACTAGAAATCGTACCCTCCATGGCATTCTACGTGTTCAAAGTTGCTTTAGGGGTCACCAAGCTCGTTGTTACATCAAGGAAGTTCGGAGAGGAATCACTACTCTTCAGTCATTTATTAGGGGACAAAACACCAGAAATAAGTATGCAGCTTCACTTCAGAGACATAGAGCTGCTGTTCTAATACAGAAGAAGATGAAAGCAGTATTTGTGAGAAACAGAATGAAGAGTACTATTGAAGCTGCGATTGTCATACAATCGATTATTCGTGGTTGGTTAGTCAGAAGATGCTCTGGAGATTTGGGATCATCGAAATCTGCAACTATGGAGACAAATGACTCGGATCAGGTGCTGGTGAAGTCTTCTTTCCTAGCTGAATTACAGCGCCGGGTGCTCAAGGCAGAAGCTGCActgagagaaaaagaagaggaaaatgACATCCTCCATCAACGTCTTCAACAGTATGAGAACCGTTGGTCTGAGTATGAACTGAAGATGAAGTCTATGGAAGAAGTGTGGCAGAAACAAATGAGATCCCTGCAGTCTAGTCTTTCCATTGCAAAAAAGAGCCTAGCCATTGATGATTATGAAAGAAATTCAGATGCCTCTGTGAATGCAAGTGATGAGAGAGACTACAGCTGGGATGTAGGAAATAATCATAGACGGCAAGAAAGCAATGGGGCAAGATCAATGAGTGCAGGCTTGAGTGTTATAAGTCGGTTGGCTGAAGAATTTGAGCAGAGGAGTCAAGTATTCGGCGATGATGCCAAGTTCTTGGTCGAGGTAAAATCTGGTCAAGTTGAAGCAAGTTTGAACCCTGATCAGGAGCTTAGAAGGTTGAAACAAATGTTTGAAGCTTGGAAAAAGGATTATGGGGCAAGACTACGTGAAACCAAGGTTATTTTACATAAGCTTGGAAGTGAAGGTGGAGTTGACAAAGTGAAGAAGTGGTGGGGAAGAAGGAACAGTACAAGGATAAATTAA 3528 0.3897 MSQTSRVPLAIQSIKSIPPEFKFTDNPTPDFMEKHGNDKEGSTDVIVSNNPEDGAIGRKVSEELQDCTRDMYFINEDSPYGEKTISLESRSSIGDEEVESVPLPLPSISKSSRESRWSDTTSYASKKKLQSWFQLPNGNWELGNIISTTGTESVISLSEGKVLKVKSESLVPANPDILDGVDDLMQLSYLNEPSVLYNLQRRYNQNMIYTKAGPVLVAVNPFKKVPLYGNDYIEAYKRKAIESPHVYAIAHMAIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLAALCGGSGIEYEILKTNPVLEAFGNAKTLRNDNSSRFGKLIEIHFSETGKISGANIQTCKFTTESRVVQCNEGERSYHIFYQLCAGAPPSLREKLNLLNVEDYKYLRQSNCYSITGVNDAEEFCIVMEALDVVHIGKEDQENVFAMLAAVLWFGNISFTVVDNENHVQVIEDEALFTVAKLIGCDIGDLKITLSTRKMKVGNDNIVQKLTLSQAIDARDAMAKSIYACLFDWIIEQINKSLAVGKRRTGRSISILDIYGFESFDRNSFEQFCINYANERLQQHFNRHLFKLEQEEYIQDGIDWAKVEFEDNQDCLNLFEKKPLGLLSLLDEESTFPNGTDLTFANKLKQHLSSNSSFRGERGKAFTVCHYAGEVTYDTTGFLEKNRDLLHVNCIQLLSSCTCHLPQIFASNMLTQSEKPIVGPLHKSGGADSQKLSVATKFKSQLFLLMQRLESTTPHFIRCIKPNNLQSPGLYEQGLVLQQLKCCGVLEVVRISRSGFPTRMSHQKFARRYGFLLLENAASQDPLSVSVAILQQFNILPEMYQVGYTKLFFRTGQIGVLEDTRNRTLHGILRVQSCFRGHQARCYIKEVRRGITTLQSFIRGQNTRNKYAASLQRHRAAVLIQKKMKAVFVRNRMKSTIEAAIVIQSIIRGWLVRRCSGDLGSSKSATMETNDSDQVLVKSSFLAELQRRVLKAEAALREKEEENDILHQRLQQYENRWSEYELKMKSMEEVWQKQMRSLQSSLSIAKKSLAIDDYERNSDASVNASDERDYSWDVGNNHRRQESNGARSMSAGLSVISRLAEEFEQRSQVFGDDAKFLVEVKSGQVEASLNPDQELRRLKQMFEAWKKDYGARLRETKVILHKLGSEGGVDKVKKWWGRRNSTRIN 1175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g2442 1175 PANTHER MYOSIN 9 1175 - -
Sto6g2442 1175 SMART iq_5 853 875 IPR000048 GO:0005515
Sto6g2442 1175 SMART iq_5 902 924 IPR000048 GO:0005515
Sto6g2442 1175 SMART iq_5 876 898 IPR000048 GO:0005515
Sto6g2442 1175 SMART iq_5 925 947 IPR000048 GO:0005515
Sto6g2442 1175 CDD MYSc_Myo8 193 840 IPR036022 -
Sto6g2442 1175 ProSiteProfiles IQ motif profile. 878 906 IPR000048 GO:0005515
Sto6g2442 1175 Gene3D Kinesin motor domain 182 781 IPR036961 -
Sto6g2442 1175 ProSiteProfiles Myosin N-terminal SH3-like domain profile. 126 175 IPR004009 GO:0003774|GO:0005524|GO:0016459
Sto6g2442 1175 PANTHER P-LOOP NUCLEOSIDE TRIPHOSPHATE HYDROLASE SUPERFAMILY PROTEIN 9 1175 - -
Sto6g2442 1175 MobiDBLite consensus disorder prediction 20 53 - -
Sto6g2442 1175 Gene3D - 362 421 - -
Sto6g2442 1175 Gene3D - 548 742 - -
Sto6g2442 1175 ProSiteProfiles Myosin motor domain profile. 179 852 IPR001609 GO:0003774|GO:0005524|GO:0016459
Sto6g2442 1175 Gene3D Myosin VI head, motor domain, U50 subdomain 423 720 - -
Sto6g2442 1175 Coils Coil 972 1020 - -
Sto6g2442 1175 MobiDBLite consensus disorder prediction 91 117 - -
Sto6g2442 1175 ProSiteProfiles IQ motif profile. 856 883 IPR000048 GO:0005515
Sto6g2442 1175 SMART MYSc_2a 173 853 IPR001609 GO:0003774|GO:0005524|GO:0016459
Sto6g2442 1175 ProSiteProfiles IQ motif profile. 928 955 IPR000048 GO:0005515
Sto6g2442 1175 MobiDBLite consensus disorder prediction 27 41 - -
Sto6g2442 1175 Pfam Myosin head (motor domain) 181 840 IPR001609 GO:0003774|GO:0005524|GO:0016459
Sto6g2442 1175 PRINTS Myosin heavy chain signature 209 228 IPR001609 GO:0003774|GO:0005524|GO:0016459
Sto6g2442 1175 PRINTS Myosin heavy chain signature 263 288 IPR001609 GO:0003774|GO:0005524|GO:0016459
Sto6g2442 1175 PRINTS Myosin heavy chain signature 305 332 IPR001609 GO:0003774|GO:0005524|GO:0016459
Sto6g2442 1175 PRINTS Myosin heavy chain signature 538 566 IPR001609 GO:0003774|GO:0005524|GO:0016459
Sto6g2442 1175 PRINTS Myosin heavy chain signature 591 619 IPR001609 GO:0003774|GO:0005524|GO:0016459
Sto6g2442 1175 Pfam IQ calmodulin-binding motif 928 944 IPR000048 GO:0005515
Sto6g2442 1175 Pfam IQ calmodulin-binding motif 878 897 IPR000048 GO:0005515
Sto6g2442 1175 Pfam IQ calmodulin-binding motif 858 875 IPR000048 GO:0005515
Sto6g2442 1175 Gene3D - 856 904 - -
Sto6g2442 1175 Gene3D - 905 953 - -
Sto6g2442 1175 Gene3D - 785 853 - -
Sto6g2442 1175 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 153 897 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto6g2442 Sto-Chr6 31277895 31320430 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto6g2442 6 1173 Myosins gene family AT1G50360 74.403 0.0 1781
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto6g2442 - - gmx:100781736 1949.48