Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g2410 ATGGGACGTGGGAAGATTGAGATCAAGAGGATTCAAAATACCACCACAAGGCAGGTGACCTTCTCGAAACGCAGAGCTGGGCTTGTGAAGAAGACTCATGAGCTTTCTGTTCTCTGTGATGCCCAAATTGGTCTCATCATCTTCTCAACCACTGGAAAGATGTTTCAATATTGCACTGAACCTTTCAGAATGGAGCAGATTATTGAAAGATATCAGAGAGCTACCGGAGCTCGCATATCTGAGCATGACACCCGGGAAGATTTATTCAGTGAAATGGCAATGCTAAGGCAGGAGACTCTCCGTCTTGAATTGGGAATTCAAAGGTACATTGGAGAGGGCATGAACTCATTACAGTATGAGGAACTGAGTAAAATTGAACAAGAACTTGAGAACTCTATTACCAAGGTCCGAAACCGTAAGGAAAGAATAATGGAAGAGGAAAACGGCAATTTGTCCCACTGGGAACACAGGGCGGTGTTGGAGTTTGAGAAGGCAGCAAAGCCAGTGGAGCAGCAAATGATGGAATTTCACCCTTACCTCCAGCTCGCACAGCCCAATATTCAAGACTCTCTCAGGGACCATCATCACCCACAACCATGGTAA 603 0.4544 MGRGKIEIKRIQNTTTRQVTFSKRRAGLVKKTHELSVLCDAQIGLIIFSTTGKMFQYCTEPFRMEQIIERYQRATGARISEHDTREDLFSEMAMLRQETLRLELGIQRYIGEGMNSLQYEELSKIEQELENSITKVRNRKERIMEEENGNLSHWEHRAVLEFEKAAKPVEQQMMEFHPYLQLAQPNIQDSLRDHHHPQPW 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g2410 200 ProSiteProfiles K-box domain profile. 85 175 IPR002487 GO:0003700|GO:0005634|GO:0006355
Sto6g2410 200 Gene3D - 14 96 IPR036879 GO:0003677|GO:0046983
Sto6g2410 200 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Sto6g2410 200 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Sto6g2410 200 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Sto6g2410 200 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Sto6g2410 200 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Sto6g2410 200 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Sto6g2410 200 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Sto6g2410 200 Coils Coil 119 146 - -
Sto6g2410 200 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 185 - -
Sto6g2410 200 PANTHER PROTEIN TRANSPARENT TESTA 16-LIKE ISOFORM X1 1 185 - -
Sto6g2410 200 Pfam K-box region 80 156 IPR002487 GO:0003700|GO:0005634|GO:0006355
Sto6g2410 200 SUPERFAMILY SRF-like 2 80 IPR036879 GO:0003677|GO:0046983
Sto6g2410 200 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto6g2410 Sto-Chr6 30964471 30969748 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto6g2410 1 185 MADS-box Gene Family AT5G23260 48.293 1.70e-56 178
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Sto6g2410 K-box 9.7e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto6g2410 - - gmx:100783876 254.218