Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g2391 ATGGGAAAATCCAGCAAGAAATCTGCTCCCAAGGTTGACGCTGCTCCTGCTGTTCAGCCTCCAAAGTCTACTACCAAGAAAGGCAAGAGAGAAGCTGAGGATGAACTTGAGAAACAAGTGAGTGCGAAGAAGCAGAAGAGAGATGTGGTTActgagaagaagaagcaagatGAGGTTACTGAGAAGCAGAAGCAAGCCAAGATGCAGAAGAATAAGAAGGAAAGTAGTTCAGAAGATTCCTCCTCATCAGATTCTGAGGAAGATAAGAAACCTGCAACCAAGGCTACTTTTCCTTCAAAGACGCAACCTGCTAAGAATGGTAAAGTGGGTACGGGCTTGCAAAAAAGCAAACCATCAAGTAGTTCCAGTTCTTCTGAATCATCTGATGACAGTTCCGATGACAATGCTGCAAAATCCAAGGTGGTTGTGAATTCCAAGGTGGCCTCTGCTGCTGGTAAGAACGGAACTGTTGCTGCTAAGAAGAAAGTTGAATCAAGTGAAAGCTCCGATACTGATAGTAGCTCAGATGATGAAAATGATGACAGAACTAAAGTTGCCCCATCTTCCAAGAAGTTACCTGTTGTTGCTGCTAAGAAAGTTGAGTCAGATAGTGAAACCTCTGACTCAGAATCTGACAGCAGTTCTGATGAGGATAATGTAACTAAATCATCCAAGAAGTTGTCTGCTGCTAGTAAGAGTACGCCTGCCAAAAAAATCAAGTCAAGTGATGACTCAACTTCTGATAGTAGCTCAGATGAAGATGATGATCTGAAAACAAAGCAACCTGCAGTATCCAAAAAGCTGCCTGCTTCAGCAGGTGTTTCAAAGAAGAAAGTTGAGAGCAGTGACAGCTCAGATGATGAATCAAGTGATGAAAGCTCTGATGATGGTAAAAAATCTACTGTCACTGCGTTGTCCAAGCCTTCTGCTACTCCAAAGAAGGCTGAATCGAGTGACAGCTCTGATTCTGATAGCAGCAGCTCTGACGATGATaacaaaaatAAGAAGACTGCAAATGTCCCCAAGGCTAATGTTAAAGCAGCTTCTTCTGTAAAGACACCTAAACAGGAGTCTAGTGAAGGTTCTGAAGATGACTCTTCAGAAGATGAGGGTAAAATGGATGTCGATGAGGATAGTAGCTCTGAGGAAAGTGATGAAGAGCCACAGAAGAAAAAGGTGAAAGCATTGACTCAGAAAGCTTCAAAAGAAAGCAGTGATAGTTCAGAGGACAGTGAAGAGGATACTGAAATTCCTTCCAAAACTCCTCAGAAAAATGGAAAAGATGTGGAGATGGTTGATGCTGATTCAATGAAGTCAAATGGGAAGCAAGCTCCCAAGACACCATTTACTCCTAAAGGGCAACCTGCCACATCAAAGACACTATTTGTCGGAAACTTGTCATATCAAGTTGAACGGGCTGATCTGGAATATTTCTTTAAAGACTGTGGAGAAGTCGTTGATGTCCGTCTCGCAACAGATGAGAATGGGACATTCAAAGGCTTTGGACATATTGAATTTGCCACAGCTGAAGCTGCTCAAAATGCCATGGAGATGAATGGGAAAGAATTGTTGAATCGCTCTGTCAGACTTGATTTTGCTCGTGAGAGGGGGGCTTATACACCAAATAGCGGCAACTTTAGCAATTCGTTCCAGAAGGGTGGGGAAGCCCAAGCGCACACAATATTTGTAAAAGGTCTTGATACATCCCAAGGGGTAGATGAGATTAGAACGAGCCTGGAGGAACATTTCAGTTGTGGAGAGATTTCAAGGATATCAGTTCCAAAAGATTTCGACACTGGCGCTGTTAAGGGGTATGCTTACTTAGACTTCAAGGATGTTGGTTCCTTCAACAAAGCTCTAGAATTGAATGGAAGTGAACTTGGAGGTTATTCCCTAATAGTTGATGAAGCAAGACCTCGATCAGATTTTCAAGGTTCAAGTGGTGGTCGAGGTGGTGGAAGGAGTGGAGGTCGAGGTGGTAGAGATGGTGGTGGTAGATTTGGTGGTGGTAGATTTGGTGGAAGGCATGGAGGAGGTCGCGGTGGCCGTGGAGGTGGCAGGGGTGGCGGTGGCAGGGGACGTGGAACACCCTATAAACCTAGCTTTGCTGCAGAAGGGACAGGGGGTCCTCGAATGAGAATTGAGGGTTCTGATGTTTCAGAATCTTCTAAGGGTGCTTGTCCTGTTCCTCATCGCAGTTCTCGGCATCACGTAGTGATGGAAGACGATGATGCGTCTGTTCAAATTCGAGAAAGAATCATTTCAAAGAGGGGGGATGATATGGATCAGAATGTGAATCATGGTGATGACTTACATGTGCCTACCAGACCAATAACAAGAGCTAGATCCAAGAGGATCCAACAGGCCATGTAA 2373 0.4387 MGKSSKKSAPKVDAAPAVQPPKSTTKKGKREAEDELEKQVSAKKQKRDVVTEKKKQDEVTEKQKQAKMQKNKKESSSEDSSSSDSEEDKKPATKATFPSKTQPAKNGKVGTGLQKSKPSSSSSSSESSDDSSDDNAAKSKVVVNSKVASAAGKNGTVAAKKKVESSESSDTDSSSDDENDDRTKVAPSSKKLPVVAAKKVESDSETSDSESDSSSDEDNVTKSSKKLSAASKSTPAKKIKSSDDSTSDSSSDEDDDLKTKQPAVSKKLPASAGVSKKKVESSDSSDDESSDESSDDGKKSTVTALSKPSATPKKAESSDSSDSDSSSSDDDNKNKKTANVPKANVKAASSVKTPKQESSEGSEDDSSEDEGKMDVDEDSSSEESDEEPQKKKVKALTQKASKESSDSSEDSEEDTEIPSKTPQKNGKDVEMVDADSMKSNGKQAPKTPFTPKGQPATSKTLFVGNLSYQVERADLEYFFKDCGEVVDVRLATDENGTFKGFGHIEFATAEAAQNAMEMNGKELLNRSVRLDFARERGAYTPNSGNFSNSFQKGGEAQAHTIFVKGLDTSQGVDEIRTSLEEHFSCGEISRISVPKDFDTGAVKGYAYLDFKDVGSFNKALELNGSELGGYSLIVDEARPRSDFQGSSGGRGGGRSGGRGGRDGGGRFGGGRFGGRHGGGRGGRGGGRGGGGRGRGTPYKPSFAAEGTGGPRMRIEGSDVSESSKGACPVPHRSSRHHVVMEDDDASVQIRERIISKRGDDMDQNVNHGDDLHVPTRPITRARSKRIQQAM 790
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g2391 790 MobiDBLite consensus disorder prediction 95 130 - -
Sto6g2391 790 MobiDBLite consensus disorder prediction 299 316 - -
Sto6g2391 790 MobiDBLite consensus disorder prediction 384 406 - -
Sto6g2391 790 MobiDBLite consensus disorder prediction 756 790 - -
Sto6g2391 790 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 559 639 IPR000504 GO:0003723
Sto6g2391 790 CDD RRM1_NUCLs 460 536 IPR034349 -
Sto6g2391 790 SUPERFAMILY RNA-binding domain, RBD 556 669 IPR035979 GO:0003676
Sto6g2391 790 Coils Coil 26 53 - -
Sto6g2391 790 MobiDBLite consensus disorder prediction 437 456 - -
Sto6g2391 790 MobiDBLite consensus disorder prediction 756 777 - -
Sto6g2391 790 MobiDBLite consensus disorder prediction 24 94 - -
Sto6g2391 790 Gene3D - 375 547 IPR012677 -
Sto6g2391 790 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 459 535 IPR000504 GO:0003723
Sto6g2391 790 MobiDBLite consensus disorder prediction 638 734 - -
Sto6g2391 790 MobiDBLite consensus disorder prediction 237 262 - -
Sto6g2391 790 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 561 631 IPR000504 GO:0003723
Sto6g2391 790 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 461 528 IPR000504 GO:0003723
Sto6g2391 790 PANTHER BNAA08G02930D PROTEIN 324 671 - -
Sto6g2391 790 MobiDBLite consensus disorder prediction 362 383 - -
Sto6g2391 790 MobiDBLite consensus disorder prediction 1 429 - -
Sto6g2391 790 MobiDBLite consensus disorder prediction 440 456 - -
Sto6g2391 790 SMART rrm1_1 560 635 IPR000504 GO:0003723
Sto6g2391 790 SMART rrm1_1 460 531 IPR000504 GO:0003723
Sto6g2391 790 MobiDBLite consensus disorder prediction 414 429 - -
Sto6g2391 790 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 324 671 - -
Sto6g2391 790 CDD RRM2_NUCLs 560 637 IPR034350 -
Sto6g2391 790 SUPERFAMILY RNA-binding domain, RBD 449 550 IPR035979 GO:0003676
Sto6g2391 790 Gene3D - 548 673 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto6g2391 Sto-Chr6 30703758 30717548 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto6g2391 461 627 Eukaryotic Initiation Factors Gene Family AT2G23350 30.233 8.61e-10 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto6g2391 K11294 - nnu:104592315 451.825