Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g2341 ATGTCGGTGAATCGAAGGCCTTCTGGGTTAAATGGCAGGATGTCGCCGAGTTCCAAGTCGGGGAAGACGAATGAGGCTTTGTATGAATCTAATTCGCTGAGGAAATGCAAGAGGAAGTGCTTGTTGTTGTGGGTTTTTCTTGGTGTTGTTGTTCCTGTGGGAAGCGCGTGGTTTTTCATGAGTTTTCACACTGAATCGTTGTTCATGAGGAAGGAGAACAAGTGGGGTGGTTGTGAAGAGAGAGCTCGAATCTTGCTACAACGTTACAATGTCAGCAAGAAGCAGCTTCAGGCGTTAGTTTCCGTTTTCTCTGTATCATCAGATCAGAACATTGTGCGGTCATGGGTATTGGAGTTTTGTGCAAATCAAGATTGTCTGAGTTTGTCAATTTTGGTTAAAGGATGCTGGTGGATTCTTGTTGGAATTACTTTGTGCTGCAAATTGTCTGGCTTCCATTTACTTTGGAGGAGTCCAAATCAGAAGCTGGTTGCTCAGCAGAAGCAGCTGCAACATTCTGTGGGGAGAAACCCAAAGGGTGCTGGGCGGTGGAGGAAAACGTTTTTAGTTACATTTGTGTTACTCGGAATAGTTGGGTCCATTTGGTTATTTTGGCACATGAATAAGGATATTATGCTGAGGAGAGAAGAAATGCTTGCTAATATGTGTGATGAGCGAGCTCGTATGCTGCAGGATCAGTTTAACGTGAGCTTGAACCATGTTCATGCTTTGGCTATTCTTGTCTCTACTTTCCACCACAGTAAATATCCTTCTGCAATCGATCAGAAAACGTTTGGAGAATACACAGAGAGAACAGCATTTGAGAGACCGCTTACCAGTGGTGTTGCTTATGCTCTGAAAGTTCCCCACTCTGATAGGGAGCATTTTGAAAAGAAGCATGGGTGGACAATTAAGAAAATGGAAACTGAGAATGAGACACTCGTCCAAGATCGTATTCCAGAAAATCTGGATCCTGCACCCTTTCAAGATGAATATGCTCCAGTGATATTTGCTCAAGAAACTGTTTCCCATATTGTATCTATTGACATGATGTCGGGGAAGGAAGACCGTGAGAATATCTTGCGAGCAAGGGCAACTGGAAAGGGAGTGCTAACATCTCCTTTTAAACTACTGAAGTCCAATCACCTGGGTGTTGTACTTACATTTGCTGTCTATAATGCTAATCTTCCTCCAGATGCTACACCGGAGCAGCGCATTGCAGCTACTGTTGGGTATCTGGGTGCATCCTATGATGTTCCATCTCTGGTGGACAAGCTTCTGCATCAACTTGCCAGCAAGCAAACCATTGTTGTAAATGTTTATGATACAACTAATGAATCAGCACCTATCACTATGTATGGTACTGATGTAGTTGATACCGGCCTACTACGAATAAGCAGCCTAGATTTTGGGGATCCTCTGCGAAAACATGAGATGCATTGCAGGTTCAAGCAGAGGCCTCCATTACCTTGGACAGCAATCAATGCATCAGTTGGAGTACTTGTTATTACTTTGCTTCTTGGTCATATTTTTCATGCCGCAATTAACAGAATAGCAAAAGTAGAGGATGACTACCGTGAAATGAGGGAGCTCATGGTTCGAGCTGAAGCTGCAGATGTGGCAAAATCTCAGTTTCTTGCAACAGTTTCACACGAGATCAGGACTCCAATGAATGGTGTTTTAGGTATGCTGCAAATGTTGATGGACACTGAACTTGATGAAGGCCAGATGGATTATGCCCAGACTGCTCACAGTAGTGGTAAAGATCTTATATCAGTGATAAATGAGGTTCTTGATCAGGCTAAGATTGAGGCAGGAAAACTTGAACTTGAAGCTGTAGAGTTTGATCCACGTTCTATTCTAGATGAAGTCCTATCACTTTTCTCTGGCAAATCTACTGAAAAAGGAATTGAgTTGGCTGTTTATGTATCCAATCAGGTGCCAGAAGTTGTCATTGGTGATCCTAAACGCTTCCGGCAAATAATTACTAATCTTGTTGGAAATTCGCTCAAGTTCACTCATGATAAAGGACACGTATTTGTATCGGTTCATTTGACGAATGAAGTAAAGAGCCCACTTCATATTATGGATGCAGTGCTAAGACAGGGCTTCCAGGATGTGTCAGACAAAACTGATAATACATTGAGTGGTTTTCCTGTTGTCAATAGATGGAAAAGCTGGGCCAATTTCAAAAAGATAAGCAGTATGAATTTGATGGATGAGCCTGAAATGATTCAATTGCTAGTAACAGTTGAGGATACAGGTATAGGAATTCCTTTGGACGCACAAAGTCGCATATTCACACCTTTTATGCAAGCTGATAGTTCTACGTCACGAACATATGGTGGCACTGGAATAGGACTGAGCATTAGTAAATGTCTAGTTGATCTCATGGGAGGAGAAATTGGATTTGTAAGCGAACTTGGAATTGGCAGCACTTTCTCTTTTAGTGGAACTTTCAGGATAGGAAAAACCATATCGCCGGATGCAAAGTTGCAACAGTGCACTCCATTCGTTTCTGAGTTTCAAGGATTGAGAGCATTAGTAGTAGATAGAAGAAAAATCCGTGCTGAAGTTACAAGGTATCATCTGCAGAGGTTGGGGATGTCTGTAGATTTGAATTCTTGTCTGGAATCGGCGTGCTCCTGTCTATCTGTTACTTGCAATACGAGTATTTCTAGACAGTGGGCAATGATTCTTATAGACAAGGATGTTATGGATATGGAAAGTAATATATTGCATGTCATCAAGAAACAGAGGCAGAACAACATCAATGGGAACCGAACAAATTTCCTGAAGATTTTTCTCTTGGCGAACTACCTTAGCCCTGTGGAACGTGCTGAGCTGAAATCTATTGGTGTTGTAGATGATGTACTAATGAAACCGCTTTGGCTTAGTGCTTTGATTCGCAGCTACAGAGAAGCCCTTGGAAGTGAAAAGAAGCAAatatatagaaagaaagaatCAAATCTAGGGAACTTGCTAAGACAAAAACAGATTTTGGTGGTTGATGATAATGCAGTAAACAGAAAAGTAGCAGAAGGAGTTCTGCAAAGATATGGAGCGAAAGTTACCTGCGTGGAGGGTGGCAGGGCTGCTTTAAAGATGCTTAAGCCACCGCATAGTTTTGATGCGTGTTTCATGGATCTCCAAATGCCAGAAATGGATGGTTTCGAAGCGACGAGGCAAATCCGCTGTATGGAAGAAGAGGTAAATGAGAAAATTGCTAGTGGTGAGGCATCGGCAGCGATGTTTGGTAATGTGGTTCATTGGCACATACCAATATTGGCTATGACGGCTGATGTAACTCAGTCTTCAAATGAGGAGTGCAGTAGGTGTGGCATGGATGACCATGTGTCAAAGCCATTTGAAGAAGAGCAGCTCTTTATGGCTGTGGCTCGATGCTTTGGGTCCGGTTCGTAG 3420 0.424 MSVNRRPSGLNGRMSPSSKSGKTNEALYESNSLRKCKRKCLLLWVFLGVVVPVGSAWFFMSFHTESLFMRKENKWGGCEERARILLQRYNVSKKQLQALVSVFSVSSDQNIVRSWVLEFCANQDCLSLSILVKGCWWILVGITLCCKLSGFHLLWRSPNQKLVAQQKQLQHSVGRNPKGAGRWRKTFLVTFVLLGIVGSIWLFWHMNKDIMLRREEMLANMCDERARMLQDQFNVSLNHVHALAILVSTFHHSKYPSAIDQKTFGEYTERTAFERPLTSGVAYALKVPHSDREHFEKKHGWTIKKMETENETLVQDRIPENLDPAPFQDEYAPVIFAQETVSHIVSIDMMSGKEDRENILRARATGKGVLTSPFKLLKSNHLGVVLTFAVYNANLPPDATPEQRIAATVGYLGASYDVPSLVDKLLHQLASKQTIVVNVYDTTNESAPITMYGTDVVDTGLLRISSLDFGDPLRKHEMHCRFKQRPPLPWTAINASVGVLVITLLLGHIFHAAINRIAKVEDDYREMRELMVRAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDEGQMDYAQTAHSSGKDLISVINEVLDQAKIEAGKLELEAVEFDPRSILDEVLSLFSGKSTEKGIELAVYVSNQVPEVVIGDPKRFRQIITNLVGNSLKFTHDKGHVFVSVHLTNEVKSPLHIMDAVLRQGFQDVSDKTDNTLSGFPVVNRWKSWANFKKISSMNLMDEPEMIQLLVTVEDTGIGIPLDAQSRIFTPFMQADSSTSRTYGGTGIGLSISKCLVDLMGGEIGFVSELGIGSTFSFSGTFRIGKTISPDAKLQQCTPFVSEFQGLRALVVDRRKIRAEVTRYHLQRLGMSVDLNSCLESACSCLSVTCNTSISRQWAMILIDKDVMDMESNILHVIKKQRQNNINGNRTNFLKIFLLANYLSPVERAELKSIGVVDDVLMKPLWLSALIRSYREALGSEKKQIYRKKESNLGNLLRQKQILVVDDNAVNRKVAEGVLQRYGAKVTCVEGGRAALKMLKPPHSFDACFMDLQMPEMDGFEATRQIRCMEEEVNEKIASGEASAAMFGNVVHWHIPILAMTADVTQSSNEECSRCGMDDHVSKPFEEEQLFMAVARCFGSGS 1139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g2341 1139 PANTHER HISTIDINE KINASE 2 29 105 - -
Sto6g2341 1139 PANTHER HISTIDINE KINASE 2 170 1135 - -
Sto6g2341 1139 SUPERFAMILY CheY-like 995 1135 IPR011006 -
Sto6g2341 1139 CDD REC_hyHK_CKI1_RcsC-like 999 1131 - -
Sto6g2341 1139 Gene3D - 63 109 - -
Sto6g2341 1139 Gene3D - 206 258 - -
Sto6g2341 1139 ProSiteProfiles CHASE domain profile. 255 479 IPR006189 -
Sto6g2341 1139 CDD HisKA 540 601 IPR003661 GO:0000155|GO:0007165
Sto6g2341 1139 Gene3D - 604 822 IPR036890 -
Sto6g2341 1139 PANTHER TWO-COMPONENT HISTIDINE KINASE 170 1135 - -
Sto6g2341 1139 PANTHER TWO-COMPONENT HISTIDINE KINASE 29 105 - -
Sto6g2341 1139 Gene3D - 992 1137 - -
Sto6g2341 1139 Gene3D - 837 981 - -
Sto6g2341 1139 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 594 815 IPR036890 -
Sto6g2341 1139 SMART REC_2 997 1131 IPR001789 GO:0000160
Sto6g2341 1139 MobiDBLite consensus disorder prediction 1 23 - -
Sto6g2341 1139 Gene3D - 508 603 - -
Sto6g2341 1139 ProSiteProfiles Response regulatory domain profile. 998 1135 IPR001789 GO:0000160
Sto6g2341 1139 PRINTS Bacterial sensor protein C-terminal signature 746 760 IPR004358 GO:0016310|GO:0016772
Sto6g2341 1139 PRINTS Bacterial sensor protein C-terminal signature 764 774 IPR004358 GO:0016310|GO:0016772
Sto6g2341 1139 PRINTS Bacterial sensor protein C-terminal signature 781 799 IPR004358 GO:0016310|GO:0016772
Sto6g2341 1139 PRINTS Bacterial sensor protein C-terminal signature 805 818 IPR004358 GO:0016310|GO:0016772
Sto6g2341 1139 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 525 606 IPR036097 GO:0000155|GO:0007165
Sto6g2341 1139 SUPERFAMILY CheY-like 840 975 IPR011006 -
Sto6g2341 1139 SMART HisKA_10 540 605 IPR003661 GO:0000155|GO:0007165
Sto6g2341 1139 Coils Coil 517 537 - -
Sto6g2341 1139 Pfam His Kinase A (phospho-acceptor) domain 540 605 IPR003661 GO:0000155|GO:0007165
Sto6g2341 1139 Gene3D CHASE domain 259 486 IPR042240 -
Sto6g2341 1139 Pfam CHASE domain 258 452 IPR006189 -
Sto6g2341 1139 ProSiteProfiles Histidine kinase domain profile. 547 821 IPR005467 -
Sto6g2341 1139 SMART HKATPase_4 652 821 IPR003594 -
Sto6g2341 1139 CDD HATPase_EvgS-ArcB-TorS-like 657 815 - -
Sto6g2341 1139 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 652 815 IPR003594 -
Sto6g2341 1139 Pfam Response regulator receiver domain 999 1080 IPR001789 GO:0000160
Sto6g2341 1139 SMART CHASE_2 255 454 IPR006189 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto6g2341 Sto-Chr6 30202936 30214317 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto6g2341 128 1135 Miscellaneous Gene Families AT5G35750 65.911 0.0 1345
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Sto6g2341 CHASE 3.7e-36 CL0165
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto6g2341 K14489 - gmx:100805107 1622.45