Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g2332 ATGCTACCTCCACGTCAGCAGTCTCGTGTTGGAGGACTTCAAACTTCTTTATCCCTAGTTTCTTCGGATCCTCGCCTCTCACCTGAGGAACCTAGATCAAACTCGGACAATATTCGAGAATCTCCCACTGAAAGTGCCAGCTCTCGAGAAACTTGGCCCACTGCTGATGCTATTGCAGCAAAGAATGTTTCTGGTGCAGACAAAATCACTCTTCAGGACATTGCAAGAGAAAGAGTAGATATAATCTCTGAGAAGATGCATCATCTACCTGATGAATTTCTGGAAGAGCTGAAGAGCAGCCTTCGGGTCATCCTTGAGGGAGGGAATGGTACACAGCACAGGGAAGAATTTTTCATTTTGCAGAAGTTTGTTCAGAGTAGAACTGATTTAACAGCCAAGACATTGATTAGAGCTCATCGTGTGCAACTCGAAATCCTTGTTGCAATTAATACAGGAATTCAGGGATTTTTGCATCCTAATATTAGTCTCTCACAAACTTCTCTCATTGAGATCTTTGTGTACAAGAGATGCAGAAATATTGCTTGTCAAAACCAGCTTCCAGCTGATGATTGTACATGTGAAATATGCACCAACAGAAATGGTTTCTGCAATCTTTGCATGTGTGTAATCTGCAACAAGTTTGACTTTGAAGTAAATACATGCCGCTGGATTGGATGTGATTTATGTTCTCATTGGACTCATACTGATTGTGCCATTCGCGATCAACTTATTTGCATGGGCCCATCAGCAAAGAGTGGAGCAGGACCAAGTGAAATGGTTTTCAGGTGTCATGCATGCAAGAGGACTTCAGAGCTACTGGGTTGGGTTAAAGATGTTTTCCAGCATTGTGCACCATCCTGGGATGGGGAGGCCTTAATGAGGGAACTTGATTTTGTTAGTAGGATCTTTCATGGTAGTAAAGACCCTCGAGGGAGGAAACTATTTTTGAAGTGTAATGATCTAaaggaaaaaatgaaaagtggAATAGTGGAGCCAAATGCAGCTTGCCGGGCAATATTGATGTTTTTTCAAGAGCTTGAGGTGGATTCCCCAAAGAGTCTAGAAAATGGAGAAAGTGGAAGGCTGATTGCTCCGCAGGAGGCATGCAATAGAATTGCTGAAGTAGTGCAAGAAGCTATAAGAAAGATGGAATTGGTGGCTGATGAGAAGATGAGAATGTTCAAGAAGGCTCGCATGGCTCTTGAGGCTTGTGATCGGGAATTAGCAGATAAGGCAAGGGAAGCAGCAGAGCTCAAAATAGACaggcaaaaaaagaaattacagATAGAAGAGCTGGAGAGAATTGTGAGGCTTAAGACTGCAGAGGCTGATATGTTCCAGTTTAAGGCGACTGAGGCTAAACGTGAGGCTGACAGGCTCCAGAGGATTGCTCTTGCCAAGTCTGATAAATCAGAGGAAGAATACACTAGCAACTACTTGAAACAGCGATTGAGTGAGGCTGAAGCTGAGAAGCAATATCTCTACGAGAAGATCAAATTGCAGGAAAGTTCTCGGGCATCACAGAGCAGTAGTGGTGGCGACCCCTCTCAGATGCTGATGTATTCCAAAATCCATGATCTGCTTTACAGCGTTCCACCCAAGATAGATAGTCAGCCTAATGAGCACCACCCTTTCCGAACAAATCCATAA 1650 0.4279 MLPPRQQSRVGGLQTSLSLVSSDPRLSPEEPRSNSDNIRESPTESASSRETWPTADAIAAKNVSGADKITLQDIARERVDIISEKMHHLPDEFLEELKSSLRVILEGGNGTQHREEFFILQKFVQSRTDLTAKTLIRAHRVQLEILVAINTGIQGFLHPNISLSQTSLIEIFVYKRCRNIACQNQLPADDCTCEICTNRNGFCNLCMCVICNKFDFEVNTCRWIGCDLCSHWTHTDCAIRDQLICMGPSAKSGAGPSEMVFRCHACKRTSELLGWVKDVFQHCAPSWDGEALMRELDFVSRIFHGSKDPRGRKLFLKCNDLKEKMKSGIVEPNAACRAILMFFQELEVDSPKSLENGESGRLIAPQEACNRIAEVVQEAIRKMELVADEKMRMFKKARMALEACDRELADKAREAAELKIDRQKKKLQIEELERIVRLKTAEADMFQFKATEAKREADRLQRIALAKSDKSEEEYTSNYLKQRLSEAEAEKQYLYEKIKLQESSRASQSSSGGDPSQMLMYSKIHDLLYSVPPKIDSQPNEHHPFRTNP 549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g2332 549 Coils Coil 401 442 - -
Sto6g2332 549 PANTHER PROTEIN OBERON 2 1 539 - -
Sto6g2332 549 Pfam Coiled-coil region of Oberon 395 528 IPR032535 -
Sto6g2332 549 MobiDBLite consensus disorder prediction 1 52 - -
Sto6g2332 549 PANTHER VERNALIZATION-INSENSITIVE PROTEIN 3 1 539 IPR004082 -
Sto6g2332 549 MobiDBLite consensus disorder prediction 530 549 - -
Sto6g2332 549 PIRSF UCP025218 60 536 IPR004082 -
Sto6g2332 549 PIRSF UCP025218 1 65 IPR004082 -
Sto6g2332 549 MobiDBLite consensus disorder prediction 1 23 - -
Sto6g2332 549 Pfam PHD - plant homeodomain finger protein 177 300 IPR032881 -
Sto6g2332 549 SMART PHD_3 207 267 IPR001965 -
Sto6g2332 549 CDD PHD_OBE1_like 207 266 - -
Sto6g2332 549 MobiDBLite consensus disorder prediction 38 52 - -
Sto6g2332 549 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 85 107 IPR004082 -
Sto6g2332 549 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 127 142 IPR004082 -
Sto6g2332 549 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 142 157 IPR004082 -
Sto6g2332 549 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 168 189 IPR004082 -
Sto6g2332 549 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 214 234 IPR004082 -
Sto6g2332 549 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 287 306 IPR004082 -
Sto6g2332 549 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 430 450 IPR004082 -
Sto6g2332 549 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 469 491 IPR004082 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto6g2332 Sto-Chr6 30164977 30167144 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto6g2332 177 279 PHD Gene Family AT5G57380 31.731 7.51e-09 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto6g2332 - - gmx:100803870 985.711