Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g2289 ATGCAGGAATCGAAGAGAACGCGCGAGGCAGAGGAAATCGCGCCCTCTCTGTCAAGGAAGACTTCTAGCGAAGGGATTTTCATGCTATCATGTAATTCTCTCTTCTTATATGTGCATCACGTGTTGTACTGTGGCTTAGCCATTGAAGGATGGATTATTTTGGTCACGGGGGTGCATGAGGAAGCACAAGAGGATGATCTGCAAAATGCATTTGGTGAATATGGAGAAATTAAGAATCTGCATTTGAATCTTGACCGTCGTACTGGTTTTGTCAAAGGTTATGCACTAATTGAATATGAACATGCTGAGGAAGCACGAAATGCCATAGAGAATCTGAATGGATTTGAGCTTCTTACTCAAACCATTTTTGTCGACTGGGCTTTCAGCAGTGGACCTATTAATGGATCAATAAGAAGAAAGAATGCTAGGAGTTCCTATGTCTCCATTGCCATTGGCCATTACCTTTGCCAGCTAGCTGTCTCGACCTATGTGATTAGACCTATGATTTTCTGTGGCTCTTCGTATCTGCGGAGTGGGGTATTCTCATTTACTTATATGTGGTATTCAGTGGTAGGCCAGCAAGACGCTCAAGGAGCCCTCGGAGGAGATATTGATGTAGTGTGCACTGTGCAGTGA 636 0.4387 MQESKRTREAEEIAPSLSRKTSSEGIFMLSCNSLFLYVHHVLYCGLAIEGWIILVTGVHEEAQEDDLQNAFGEYGEIKNLHLNLDRRTGFVKGYALIEYEHAEEARNAIENLNGFELLTQTIFVDWAFSSGPINGSIRRKNARSSYVSIAIGHYLCQLAVSTYVIRPMIFCGSSYLRSGVFSFTYMWYSVVGQQDAQGALGGDIDVVCTVQ 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g2289 211 PRINTS RNA binding motif protein 8 family signature 42 56 IPR008111 GO:0003723|GO:0005634|GO:0005737|GO:0006396
Sto6g2289 211 PRINTS RNA binding motif protein 8 family signature 98 114 IPR008111 GO:0003723|GO:0005634|GO:0005737|GO:0006396
Sto6g2289 211 PRINTS RNA binding motif protein 8 family signature 116 128 IPR008111 GO:0003723|GO:0005634|GO:0005737|GO:0006396
Sto6g2289 211 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 53 121 IPR000504 GO:0003723
Sto6g2289 211 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 51 129 IPR000504 GO:0003723
Sto6g2289 211 SMART rrm1_1 52 125 IPR000504 GO:0003723
Sto6g2289 211 CDD RRM_RBM8 48 132 IPR033744 GO:0003729
Sto6g2289 211 SUPERFAMILY RNA-binding domain, RBD 49 142 IPR035979 GO:0003676
Sto6g2289 211 Gene3D - 1 136 IPR012677 -
Sto6g2289 211 PANTHER RNA-BINDING PROTEIN 8A 47 143 IPR008111 GO:0003723|GO:0005634|GO:0005737|GO:0006396
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto6g2289 Sto-Chr6 29666177 29673121 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto6g2289 53 127 Eukaryotic Initiation Factors Gene Family AT4G34110 36.000 9.84e-09 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto6g2289 K12876 - gmx:100527187 187.578