Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g2267 ATGGCGAGCGACGGCCGAGCTGCGACGGTGAGCGACGATCGAGCTGCGACGGTGTTGGACGGTCAAGTGCTATCCTTGTCTTGTGAGCTCTTGAAGAATATGAAGGATCCTAATGCCTGTGTGGATGATAAAAGTGAGAGCAGATTATATATTGGTAACCTTGATCTCAGAATAACAGAAGCAACTCTTATAAAAATGTTTTCTCCTTTCGGAAAGATTGTATCCGAGGACTTCTTATTGCACACTCGTGGCCCGAAACGCGGGGAGCCACGAGGTTTTGCTTTTATACAGTACAGCTCAAAAGAGGAAGCAGAATTAGCCAAGGAGAAAATGCATGGAAGGTTAGCTTGTGGCCGGCCACTGGTTGTTCGGCTCGCTAGTGAGAAGTACCTGTTTGAAACAGCTGATAACTCTTCAAAAGCCGTGGAAGGGAAAAAGATGCACCTTTCTGGTGGTGGCTTGGGACAGACAAGTCGTAGTGCAAAAATAGCTGCAATAAAGAGCAAATTGAAATCTTTAGAGGAGGAAAGCTCTAGGTCAAAGAAACAGAAGCTGACTGATGATATATCTTGA 573 0.4555 MASDGRAATVSDDRAATVLDGQVLSLSCELLKNMKDPNACVDDKSESRLYIGNLDLRITEATLIKMFSPFGKIVSEDFLLHTRGPKRGEPRGFAFIQYSSKEEAELAKEKMHGRLACGRPLVVRLASEKYLFETADNSSKAVEGKKMHLSGGGLGQTSRSAKIAAIKSKLKSLEEESSRSKKQKLTDDIS 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g2267 190 SUPERFAMILY RNA-binding domain, RBD 35 131 IPR035979 GO:0003676
Sto6g2267 190 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 49 121 IPR000504 GO:0003723
Sto6g2267 190 SMART rrm1_1 48 124 IPR000504 GO:0003723
Sto6g2267 190 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 47 128 IPR000504 GO:0003723
Sto6g2267 190 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 35 185 - -
Sto6g2267 190 Coils Coil 163 183 - -
Sto6g2267 190 CDD RRM_RBM18 48 127 IPR039157 -
Sto6g2267 190 Gene3D - 44 148 IPR012677 -
Sto6g2267 190 PANTHER RNA-BINDING PROTEIN 18-RELATED 35 185 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto6g2267 Sto-Chr6 29493934 29497458 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto6g2267 47 129 Eukaryotic Initiation Factors Gene Family AT1G71770 38.554 1.13e-11 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto6g2267 K24527 - gmx:100804800 225.713