Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g2243 ATGTGCTTGATCGCTTCTTCACATACGACGTCAAGAAGTCCAGCCCTCCTCCTACGAGTTGTTGCAGGTACCTTTCCTACTCCTTCAAGTTTTGGATTTGTGCGTTGTCTGGCTCCGGATTTACCTTTGTTGGTTGATGGAGGCCGGAGGAATCACTCATTTCTCTACGCAAGCCGTGGTGGAGGGGGATGTTGTTCGTCCGTCCCTTTCATCAGTCTCGAGACGAAGTTCTTAAGGTTTCAGCTGGTTGTTGTGTTTAGTTACGAAATTATGGCGGCGACCCAAAACCCTTCTCAACCGGCGAAGCTACGGTGGGGTGAGCTCGATGAGGATGATGGAGAGGATCTTGACTTCTTGCTGCCGCCGCGACAGGTGATTGGCCCCGACGAGAACGGCATAAAGAAGGTGATTGAATACAAATTCAACGAAGATGGCAATAAGGTTAAgatcaccaccaccactcgtACGCGCAAGCTTGCTAACGCTCGCCTAAGTAAGCGGGCCATTGAGAGGCGATCCTGGACTAAGTTTGGCGATGCTGTTCACGAGGATGTTGGTAGTAGGCTCACCATGGTCTCCACCGAAGAGATCCTCCTAGAGCGACCCAGGGCTCCAGGTAGCAAACCAGAAGAACCAAAGGTTGCTGGAGACCCATTGGCTCAGTTTCAAAAAGGTGCTGTTCTCATGGTCTGTCGGACTTGTGGGAAAAAGGGTGACCATTGGACATCAAGGTGTCCATACAAGGATCTTGCCCAACCAGTGGAGGCATTTATCGACAAGCCTGCTGCATCAGAAGCTGCGGCTGCTGCTTCCGGTCCAGCTAAGGGGGCATATGTTCCCCCTGGTATGAGAGCAGGTGCAGAAAGGACTGGGTCAGATATGCGAcgaaggaatgatgaaaactcTGTAAGGGTCACCAACCTCTCAGAGGACACGAGAGAGCCCGATTTGCTTGAGCTGTTCCGTCCGTTTGGCGCTGTAAGCAGAGTCTATGTTGCTGTTGATCAAAAGACTGGTATGAGCAGAGGATTTGGTTTTGTTAACTTTGTTAACAGGGAAGATGCTCAGAGAGCTATTAACAAACTCAACGGTTATGGTTATGACAATCTCATCCTTAGAGTTGAATGGGCCACCCCAAGGGCAAACTAA 1149 0.4865 MCLIASSHTTSRSPALLLRVVAGTFPTPSSFGFVRCLAPDLPLLVDGGRRNHSFLYASRGGGGCCSSVPFISLETKFLRFQLVVVFSYEIMAATQNPSQPAKLRWGELDEDDGEDLDFLLPPRQVIGPDENGIKKVIEYKFNEDGNKVKITTTTRTRKLANARLSKRAIERRSWTKFGDAVHEDVGSRLTMVSTEEILLERPRAPGSKPEEPKVAGDPLAQFQKGAVLMVCRTCGKKGDHWTSRCPYKDLAQPVEAFIDKPAASEAAAAASGPAKGAYVPPGMRAGAERTGSDMRRRNDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGMSRGFGFVNFVNREDAQRAINKLNGYGYDNLILRVEWATPRAN 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g2243 382 Hamap Eukaryotic translation initiation factor 3 subunit G [EIF3G]. 102 381 IPR017334 GO:0003743|GO:0005737|GO:0005852
Sto6g2243 382 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 303 369 IPR000504 GO:0003723
Sto6g2243 382 CDD eIF3G 131 249 IPR024675 -
Sto6g2243 382 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 100 382 - -
Sto6g2243 382 SMART rrm1_1 302 375 IPR000504 GO:0003723
Sto6g2243 382 SUPERFAMILY RNA-binding domain, RBD 299 381 IPR035979 GO:0003676
Sto6g2243 382 CDD RRM_eIF3G_like 302 377 IPR034240 -
Sto6g2243 382 Gene3D - 262 382 IPR012677 -
Sto6g2243 382 Pfam Eukaryotic translation initiation factor 3 subunit G 124 250 IPR024675 -
Sto6g2243 382 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 100 382 - -
Sto6g2243 382 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 301 379 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto6g2243 Sto-Chr6 29213429 29218613 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto6g2243 101 380 Eukaryotic Initiation Factors Gene Family AT3G11400 70.513 6.82e-155 437
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto6g2243 K03248 - jre:108998481 506.908