Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Sto6g2147 | ATGGAGATGCAACAACTCCTCAGTATGGGCTTCCCAGACGAGTTAGCAGCCCAAGCCTTAGCTGCTACTGGTGGCAAATCCACCATTAAAGCCACCGAATGGATCCTCAATCACAAAACCACTTCCACATCTACTTCGaacccttcttctcctcctcctcctcctccatttCAGCCTAAGCTCGACCGCTTCTTCCAATTTCCATCCAAGCCCTCTTCCACAGTCACGGCCACAGCACAAGCAGCAATACAgcaagaaggaggaggaggagacgCAGATTTAGGTTTAGAAGAATCAACCCCAAATCTGAACCCTTCATCATCCAAACGTCTCAAACTGTCCCCTTCTAACGCCACCACCAAACACACTTCTCCTTCTCCCTTCTTTTCGAATCGTTTTCATCGCCCAAAGGCGGAGCCGCACGAGCCCTTGTATGAGCGAATGCGCCCCAGAGTCATCGATGATGTTATCGGTCAGGACCATCTCGTTGCTGCGAATTCGCTACTTGGCTCTGCAATCGAGCGCGGCCGTCTCCCTTCCATCATCTTCTGGGGTCCTCCTGGTACTGGTAAGACTTCTATTGCTAAAGCCATTGTTAACTCTGTAACTGCTCAGAAACATCAACAATGCCCCTGTTATCGGTTTGTTTCGTTATCTGCTGTGACTAGTGGTGTTAGAGATGTGAGGGATGCGGTTGATGAGGCTAGGAAACTGAGACTTAAAAGCAATCAGAGAACCGTTTTGTTCGTGGATGAGGTTCACAGGTTTAACAAGTCTCAACAGGACTCTTTCTTACCAGTCATTGAAGATGGGAGTATTGTTTTCATTGGGGCCACTACTGAGAACCCTTCTTTCCATTTGATTACACCTTTGCTGTCTCGTTGCCGTGTTCTTACTCTGAACCCCTTGAAACCTCACCATGTTGCTATGATTCTAAAGGGAGCTGTGAATAATTTGGACAAAGGATTGATGCAAACCGTTGGTTTTCAAGTTGATGTGACTGAGGATGTCATTAATTTTATGGCTAACAATTGTGATGGTGATGCTCGGGTGGCATTGAATGCCTTGGAGATAGCAGCTGTTACAGCAGCTGCCCGGTTACAAAATGGTAAGCAATCCAAGGAGATCAAGGAAACTGAAGGCATAAATAGTCAGATAGACAGAGAAAATAGAGTTGGTCCATCTGTCAATATTATTACCCTTGATGATGCAAAGGAGGCACTTCAGTGCAAGCACCTTGCTTATGATAAAGCTGGGGAAGAGCACTATAATCTAATTAGTGCACTGCACAAATCAATGAGGGGAAGTGATGCTAATGCAGCAATTTATTGGTTGGCAAGAATGTTGGAAGGAGGCGAAGAGCCTCTTTACATTGCACGGAGATTGATAAGGTTCGCAAGCGAGGATGTTGGGTTGGCTGATCCATCTGCTCTCAGCCAGGCTGTTTCATGCTACCAAGCCTGCCACTTTTTGGGTATGCCTGAGTGCAATGTGATTCTTGCACAGTGTGTTGCTTACTTGGCCTTGGCTCCAAAATCTGTCAGTGTTTATCGAGCAATAGGAGCTGCTCAGAAAGTAGTAAGGGAATCAGTTGGACAGAATGAGGGAGTGCCCCTTCATCTGAGGAATGCACCAACTAAACTAATGAAGGAACTCGGTTATGGGAAGGGATACATATACCCTCCTGATAATCCCTCTTTGACACAGAGCTACTTACCTCCCTCATTACATGGGTATGCTATTAGATTGAAAATTCTTATGCTTTTGGCTTATGCATTAGATTTGCAAAGAAGCTctgttctctctctttcttgctATGTACACCAAGCCATGTGTTTTGATGATTGA | 1848 | 0.4361 | MEMQQLLSMGFPDELAAQALAATGGKSTIKATEWILNHKTTSTSTSNPSSPPPPPPFQPKLDRFFQFPSKPSSTVTATAQAAIQQEGGGGDADLGLEESTPNLNPSSSKRLKLSPSNATTKHTSPSPFFSNRFHRPKAEPHEPLYERMRPRVIDDVIGQDHLVAANSLLGSAIERGRLPSIIFWGPPGTGKTSIAKAIVNSVTAQKHQQCPCYRFVSLSAVTSGVRDVRDAVDEARKLRLKSNQRTVLFVDEVHRFNKSQQDSFLPVIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHHVAMILKGAVNNLDKGLMQTVGFQVDVTEDVINFMANNCDGDARVALNALEIAAVTAAARLQNGKQSKEIKETEGINSQIDRENRVGPSVNIITLDDAKEALQCKHLAYDKAGEEHYNLISALHKSMRGSDANAAIYWLARMLEGGEEPLYIARRLIRFASEDVGLADPSALSQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSVSVYRAIGAAQKVVRESVGQNEGVPLHLRNAPTKLMKELGYGKGYIYPPDNPSLTQSYLPPSLHGYAIRLKILMLLAYALDLQRSSVLSLSCYVHQAMCFDD | 615 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Sto6g2147 | 615 | SMART | uba_6 | 1 | 37 | IPR015940 | - | |
| Sto6g2147 | 615 | Pfam | UBA/TS-N domain | 4 | 35 | IPR015940 | - | |
| Sto6g2147 | 615 | Gene3D | - | 133 | 301 | IPR027417 | - | |
| Sto6g2147 | 615 | MobiDBLite | consensus disorder prediction | 99 | 130 | - | - | |
| Sto6g2147 | 615 | Pfam | ATPase family associated with various cellular activities (AAA) | 181 | 297 | IPR003959 | GO:0005524|GO:0016887 | |
| Sto6g2147 | 615 | Gene3D | - | 2 | 52 | - | - | |
| Sto6g2147 | 615 | Gene3D | - | 303 | 379 | - | - | |
| Sto6g2147 | 615 | SMART | AAA_5 | 177 | 303 | IPR003593 | - | |
| Sto6g2147 | 615 | CDD | AAA | 157 | 296 | - | - | |
| Sto6g2147 | 615 | ProSiteProfiles | Ubiquitin-associated domain (UBA) profile. | 1 | 38 | IPR015940 | - | |
| Sto6g2147 | 615 | Pfam | AAA C-terminal domain | 330 | 434 | IPR032423 | - | |
| Sto6g2147 | 615 | SUPERFAMILY | post-AAA+ oligomerization domain-like | 419 | 580 | IPR008921 | GO:0003677|GO:0006260 | |
| Sto6g2147 | 615 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 140 | 375 | IPR027417 | - | |
| Sto6g2147 | 615 | MobiDBLite | consensus disorder prediction | 36 | 63 | - | - | |
| Sto6g2147 | 615 | SUPERFAMILY | UBA-like | 3 | 40 | IPR009060 | GO:0005515 | |
| Sto6g2147 | 615 | Pfam | MgsA AAA+ ATPase C terminal | 435 | 578 | IPR021886 | - | |
| Sto6g2147 | 615 | Gene3D | - | 513 | 581 | - | - | |
| Sto6g2147 | 615 | MobiDBLite | consensus disorder prediction | 47 | 61 | - | - | |
| Sto6g2147 | 615 | MobiDBLite | consensus disorder prediction | 86 | 142 | - | - | |
| Sto6g2147 | 615 | Gene3D | - | 409 | 512 | - | - | |
| Sto6g2147 | 615 | PANTHER | WERNER HELICASE-INTERACTING PROTEIN 1 FAMILY MEMBER | 15 | 579 | - | - | |
| Sto6g2147 | 615 | CDD | HLD_clamp_RarA | 303 | 409 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Sto6g2147 | Sto-Chr6 | 27703749 | 27706782 | Proximal |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Sto6g2147 | 141 | 357 | Core DNA Replication Machinery Family | AT1G63160 | 25.455 | 1.12e-10 | 61.6 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Sto6g2147 | K07478 | - | gmx:100799257 | 761.14 |