Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g2146 ATGGCGGATGAATCATTTCTTTCCTGCCAAACAGGATCCCAATTGGAGGCCACAATCGACCAATTCTCCTTCACTAGCTCTCGTTCCTTCAACGATTTCATCTCTTTCCAGGAATCCCACCGCGACCCACCACCATCACAATCCTCATCCCAATCACTGCCCAAGAAATCCCAGAAGAAGAAACTGAGTCGCTGCAAGACTGCCCTGCAATGGTTGTCTTGCGGGACCTCAGACCAAACACAGCCAACGAGATTCCCAAACCGCAGTCTAGCTCCGTTATCAGGCAAGGCATTTGCTTGCTTGCGGTTCACCATGTGTACAATTGGTTACGGAGACATCACTCCTTTGACTCCAATAACGAAGGTCTTCGCTTGTTTCTTCGTGTTGGTAGGGTTTGGATTCATAGACATATTGCTTAGTGGGCTGGTCAATTATGTTCTAGATTTGCAAGAGAGCATGATTCTAGCTGGGCTTCAAATGGGTGCTTCTCAAAGtcctcaacaacaacaacaagaaCAACAAGGGTTCTCTGCAAGGAATTACGTGGTGGATGTGGCAAAGGGGCGTATGAGAATCAGATTGAAGGTTGGTTTGGCACTTGGGGTGGTGGTGTTGTGTATTGGAATTGGGAGTTTGGTTTTGTACTTTGTGGAGGATTTGGATTGGATTGattcaatttatttatctgTTATGTCTGTGACAACAGTAGGGTATGGAGATAAAGCCTTCAAGACCCTTCCGGGTCGTCTCTTTGCAGCGATATGGCTCCTTGTTTCGACATTGATGGTGGCTCGGGCATTCCTGTATTTGGCAGAGGCCAGGATTGATAAGAGGCACCGCAGGCTAGCCAAGTCAGTGTTGCATAGAGATATAACTGTGGAGGATTTGCTTGCTGCTGATATCAATCACACTGGTTTCATTAGTAAGTCAGAGTATGTAATCTTGAAGTTGAAAGAGATGGGGAAGATACGTGAGAAAGATATATTGCAAATATGTGACCAATTCAGCAAGCTTGATCCTAACAACTCAGGAAAGATAACATTACCCAGTCTCTTGGAGGGGAAGGCTGCATTTGGCAACATGGGAAACCAGTCAAGAGAGAAAAAGGCTGAGACCCTTCATCTCTGCAAAAATGTTACAGATATGTGA 1149 0.4439 MADESFLSCQTGSQLEATIDQFSFTSSRSFNDFISFQESHRDPPPSQSSSQSLPKKSQKKKLSRCKTALQWLSCGTSDQTQPTRFPNRSLAPLSGKAFACLRFTMCTIGYGDITPLTPITKVFACFFVLVGFGFIDILLSGLVNYVLDLQESMILAGLQMGASQSPQQQQQEQQGFSARNYVVDVAKGRMRIRLKVGLALGVVVLCIGIGSLVLYFVEDLDWIDSIYLSVMSVTTVGYGDKAFKTLPGRLFAAIWLLVSTLMVARAFLYLAEARIDKRHRRLAKSVLHRDITVEDLLAADINHTGFISKSEYVILKLKEMGKIREKDILQICDQFSKLDPNNSGKITLPSLLEGKAAFGNMGNQSREKKAETLHLCKNVTDM 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g2146 382 SUPERFAMILY Voltage-gated potassium channels 104 151 - -
Sto6g2146 382 Pfam Ion channel 103 146 IPR013099 -
Sto6g2146 382 Pfam Ion channel 204 272 IPR013099 -
Sto6g2146 382 PRINTS Two pore domain K+ channel signature 103 131 IPR003280 GO:0005267|GO:0016020|GO:0071805
Sto6g2146 382 PRINTS Two pore domain K+ channel signature 234 243 IPR003280 GO:0005267|GO:0016020|GO:0071805
Sto6g2146 382 ProSitePatterns EF-hand calcium-binding domain. 300 312 IPR018247 -
Sto6g2146 382 MobiDBLite consensus disorder prediction 38 56 - -
Sto6g2146 382 Gene3D - 98 182 - -
Sto6g2146 382 MobiDBLite consensus disorder prediction 38 58 - -
Sto6g2146 382 Gene3D - 279 368 - -
Sto6g2146 382 PANTHER POTASSIUM CHANNEL, SUBFAMILY K 103 352 IPR003280 GO:0005267|GO:0016020|GO:0071805
Sto6g2146 382 SUPERFAMILY EF-hand 298 353 IPR011992 -
Sto6g2146 382 Gene3D - 183 278 - -
Sto6g2146 382 PANTHER TWO-PORE POTASSIUM CHANNEL 4-RELATED 103 352 - -
Sto6g2146 382 SUPERFAMILY Voltage-gated potassium channels 187 296 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto6g2146 Sto-Chr6 27693580 27696376 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto6g2146 92 352 Ion Channels AT4G01840 68.199 5.12e-122 357
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto6g2146 K05389 - gmx:100801488 418.698