Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g2139 ATGGAGATGCAACAACTCCTCAGTATGGGCTTCCCAGACGAGTTAGCAGCCCAAGCCTTAGCTGCTACTGGTGGCAAATCCACCATTAAAGCCACCGAATGGATCCTCAATCACAAAACCACTTCCACATCTACTTCGaacccttcttctcctcctcctcctcctccatttCAGCCTAAGCTCGACCGCTTCTTCCAATTTCCATCCAAGCCCTCTTCCACAGTCACGGCCACAGCACAAGCAGCAATACAgcaagaaggaggaggaggagacgCAGATTTAGGTTTAGAAGAATCAACCCCAAATCTGAACCCTTCATCATCCAAACGTCTCAAACTGTCCCCTTCTAACGCCACCACCAAACACACTTCTCCTTCTCCCTTCTTTTCGAATCGTTTTCATCGCCCAAAGGCGGAGCCGCACGAGCCCTTGTATGAGCGAATGCGCCCCAGAGTCATCGATGATGTTATCGGTCAGGACCATCTCGTTGCTGCGAATTCGCTACTTGGCTCTGCAATCGAGCGCGGCCGTCTCCCTTCCATCATCTTCTGGGGTCCTCCTGGTACTGGTAAGACTTCTATTGCTAAAGCCATTGTTAACTCTGTAACTGCTCAGAAACATCAACAATGCCCCTGTTATCGGTTTGTTTCGTTATCTGCTGTGACTAGTGGTGTTAGAGATGTGAGGGATGCGGTTGATGAGGCTAGGAAACTGAGACTTAAAAGCAATCAGAGAACCGTTTTGTTCGTGGATGAGGTTCACAGGTTTAACAAGTCTCAACAGGACTCTTTCTTACCAGTCATTGAAGATGGGAGTATTGTTTTCATTGGGGCCACTACTGAGAACCCTTCTTTCCATTTGATTACACCTTTGCTGTCTCGTTGCCGTGTTCTTACTCTGAACCCCTTGAAACCTCACCATGTTGCTATGATTCTAAAGGGAGCTGTGAATAATTTGGACAAAGGATTGATGCAAACCGTTGGTTTTCAAGTTGATGTGACTGAGGATGTCATTAATTTTATGGCTAACAATTGTGATGGTGATGCTCGGGTGGCATTGAATGCCTTGGAGATAGCAGCTGTTACAGCAGCTGCCCGGTTACAAAATGGTAAGCAATCCAAGGAGATCAAGGAAACTGAAGGCATAAATAGTCAGATAGACAGAGAAAATAGAGTTGGTCCATCTGTCAATATTATTACCCTTGATGATGCAAAGGAGGCACTTCAGTGCAAGCACCTTGCTTATGATAAAGCTGGGGAAGAGCACTATAATCTAATTAGTGCACTGCACAAATCAATGAGGGGAAGTGATGCTAATGCAGCAATTTATTGGTTGGCAAGAATGTTGGAAGGAGGCGAAGAGCCTCTTTACATTGCACGGAGATTGATAAGGTTCGCAAGCGAGGATGTTGGGTTGGCTGATCCATCTGCTCTCAGCCAGGCTGTTTCATGCTACCAAGCCTGCCACTTTTTGGGTATGCCTGAGTGCAATGTGATTCTTGCACAGTGTGTTGCTTACTTGGCCTTGGCTCCAAAATCTGTCAGTGTTTATCGAGCAATAGGAGCTGCTCAGAAAGTAGTAAGGGAATCAGTTGGACAGAATGAGGGAGTGCCCCTTCATCTGAGGAATGCACCAACTAAACTAATGAAGGAACTCGGTTATGGGAAGGGATACATATACCCTCCTGATAATCCCTCTTTGACACAGAGCTACTTACCTCCCTCATTACATGGGTACAAATTTCTTGAATGGCCTGATAGGAATACCTCTGAttga 1776 0.4448 MEMQQLLSMGFPDELAAQALAATGGKSTIKATEWILNHKTTSTSTSNPSSPPPPPPFQPKLDRFFQFPSKPSSTVTATAQAAIQQEGGGGDADLGLEESTPNLNPSSSKRLKLSPSNATTKHTSPSPFFSNRFHRPKAEPHEPLYERMRPRVIDDVIGQDHLVAANSLLGSAIERGRLPSIIFWGPPGTGKTSIAKAIVNSVTAQKHQQCPCYRFVSLSAVTSGVRDVRDAVDEARKLRLKSNQRTVLFVDEVHRFNKSQQDSFLPVIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHHVAMILKGAVNNLDKGLMQTVGFQVDVTEDVINFMANNCDGDARVALNALEIAAVTAAARLQNGKQSKEIKETEGINSQIDRENRVGPSVNIITLDDAKEALQCKHLAYDKAGEEHYNLISALHKSMRGSDANAAIYWLARMLEGGEEPLYIARRLIRFASEDVGLADPSALSQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSVSVYRAIGAAQKVVRESVGQNEGVPLHLRNAPTKLMKELGYGKGYIYPPDNPSLTQSYLPPSLHGYKFLEWPDRNTSD 591
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g2139 591 PANTHER WERNER HELICASE-INTERACTING PROTEIN 1 FAMILY MEMBER 15 589 - -
Sto6g2139 591 Gene3D - 133 301 IPR027417 -
Sto6g2139 591 Gene3D - 513 590 - -
Sto6g2139 591 SMART uba_6 1 37 IPR015940 -
Sto6g2139 591 Pfam UBA/TS-N domain 4 35 IPR015940 -
Sto6g2139 591 Pfam AAA C-terminal domain 330 434 IPR032423 -
Sto6g2139 591 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 140 375 IPR027417 -
Sto6g2139 591 MobiDBLite consensus disorder prediction 99 130 - -
Sto6g2139 591 Pfam ATPase family associated with various cellular activities (AAA) 181 297 IPR003959 GO:0005524|GO:0016887
Sto6g2139 591 SUPERFAMILY post-AAA+ oligomerization domain-like 419 588 IPR008921 GO:0003677|GO:0006260
Sto6g2139 591 SMART AAA_5 177 303 IPR003593 -
Sto6g2139 591 Gene3D - 409 512 - -
Sto6g2139 591 CDD AAA 157 296 - -
Sto6g2139 591 Pfam MgsA AAA+ ATPase C terminal 435 586 IPR021886 -
Sto6g2139 591 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 1 38 IPR015940 -
Sto6g2139 591 Gene3D - 2 52 - -
Sto6g2139 591 MobiDBLite consensus disorder prediction 36 63 - -
Sto6g2139 591 SUPERFAMILY UBA-like 3 40 IPR009060 GO:0005515
Sto6g2139 591 MobiDBLite consensus disorder prediction 47 61 - -
Sto6g2139 591 MobiDBLite consensus disorder prediction 86 142 - -
Sto6g2139 591 Gene3D - 303 379 - -
Sto6g2139 591 CDD HLD_clamp_RarA 303 409 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto6g2139 Sto-Chr6 27639313 27641088 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto6g2139 141 357 Core DNA Replication Machinery Family AT1G63160 25.455 1.81e-10 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto6g2139 K07478 - qsu:112015639 778.859