Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g2117 ATGCCTCCTAAATATGACAATGTTGTGGATTTAAATCCTCTGCGCAATAACTGGAGGATTAAGGTTGGAGTCATCTGTTTGTGGAAGATGCCCTCCTACACAAATCCTTCTGAGTTTTTCAGTTTAGAGATGGTTTTTTGTGATGGAttgGGTGGTTATATTCATGGGTATGTGAAGAAATGTTTCATGCAGAAGTTTAAGGATCAACTTGAGGAGGGAAAGGTTTATGCCATATCTAAATTTCTTCTTGGTCAGAATGGAGGTTCCTATAGGACGTGCATGCACtcttacaaaataaattttcagtTCTCTACAGTAGTCAAACTGCTAGAAGATGACAAAGAGATATCTTTTTATGAATTTGATTTTGTTCCTTTTCCTGATATAAGCTTGGGAGTTCATGATGACAGCTGTTTAGTTGATATAATAGGTTTGTTTACTGGGAAGAGTGATGTTCTGGAGTCAAATAATAATGGAAAATCTTCAAAGTGTATTGATATTGAACTTACTGATTTGGAGAAAAATAAGCTTAGTTGTACTTTCTGGGATCATTATTGTCAAATGTTGGAAGAATTTTTAAAGGATTCAACAGATAAACCTATTGTTATTCTGCTACAGTGGTGCAAGATCAAGGATTATCCAGGAAATAATGGTGTTCGTAAGGTTTCAAATTCCCTCTACTCAACACGTTTGCTAATAAATCCTCAACTCAAGGAATGTCAAGATTTTTTGTCCAGAATATCTGAGGTTCGTGGGACAATTTCATCTAATGTTAGTCAGATTTCAAATTCTTCAAGTGTTGCTGTTGAGGAGGATCTTTTGACTCTAACCGTTGCCAAAAAGATTGATGAGCTCGGTTATTCTTGTGCTGATATAAATTCATGCGTTATTCTTGGTACTGTTCTTAGTATTGATACTGCTAAAGGGTGGTACTACAATTCTTGTAGAAGATGCAAAAAGAAAGTCATTCCTGATGGTGATGGTTTCTTTTGCGAAAAGTATGGCAATCTTGTGGACTCTGTTGTTCCAAGATTTAAAATAGAGCTGAAAGTTGTTGATGAATCTGGCTGTGCTGTATTTATACTTTTTGATCGTGAAGTTAATCAAGTTCTTGGTTGCACTGCTGCTGAATTGATTGAGGGATTAGTGGTTGAATCTCCATGTAATAGGCATGCAGCTGTTTTCTCGGACATTGATAAGGAGACTTTGACTATTAATCTGGAAGACTCATCTGAAAATGGTATAACTCCTGCAAAAAGGCTGAGTGGAGATTTTGATGAAGAAGGTTCTCCGTTGACTGCCGAAGTTCCATCCGAGAACTCCTcaaacaaattgaagaagatCATGAAAGTAGAACCATAG 1362 0.3583 MPPKYDNVVDLNPLRNNWRIKVGVICLWKMPSYTNPSEFFSLEMVFCDGLGGYIHGYVKKCFMQKFKDQLEEGKVYAISKFLLGQNGGSYRTCMHSYKINFQFSTVVKLLEDDKEISFYEFDFVPFPDISLGVHDDSCLVDIIGLFTGKSDVLESNNNGKSSKCIDIELTDLEKNKLSCTFWDHYCQMLEEFLKDSTDKPIVILLQWCKIKDYPGNNGVRKVSNSLYSTRLLINPQLKECQDFLSRISEVRGTISSNVSQISNSSSVAVEEDLLTLTVAKKIDELGYSCADINSCVILGTVLSIDTAKGWYYNSCRRCKKKVIPDGDGFFCEKYGNLVDSVVPRFKIELKVVDESGCAVFILFDREVNQVLGCTAAELIEGLVVESPCNRHAAVFSDIDKETLTINLEDSSENGITPAKRLSGDFDEEGSPLTAEVPSENSSNKLKKIMKVEP 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g2117 453 MobiDBLite consensus disorder prediction 413 453 - -
Sto6g2117 453 PANTHER BNAC07G49340D PROTEIN 26 381 - -
Sto6g2117 453 CDD RPA1_DBD_C 295 381 IPR013955 -
Sto6g2117 453 SUPERFAMILY Nucleic acid-binding proteins 295 382 IPR012340 -
Sto6g2117 453 SUPERFAMILY Nucleic acid-binding proteins 121 248 IPR012340 -
Sto6g2117 453 CDD RPA1_DBD_A_like 19 107 - -
Sto6g2117 453 Gene3D - 258 422 IPR012340 -
Sto6g2117 453 Pfam Replication factor-A C terminal domain 299 380 IPR013955 -
Sto6g2117 453 Pfam Domain of unknown function DUF223 43 129 IPR003871 -
Sto6g2117 453 PANTHER REPLICATION FACTOR A 1, RFA1 26 381 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Sto6g2117 453 Gene3D - 4 109 IPR012340 -
Sto6g2117 453 CDD RPA1_DBD_B_like 141 246 - -
Sto6g2117 453 SUPERFAMILY Nucleic acid-binding proteins 4 116 IPR012340 -
Sto6g2117 453 Gene3D - 114 257 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto6g2117 Sto-Chr6 27426753 27429544 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto6g2117 2 378 Core DNA Replication Machinery Family AT4G19130 23.632 5.18e-22 97.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto6g2117 - - bvg:104885244 249.21