Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g1981 ATGGATGAAGGTGAGGGAGGGTTCGGTGAGAGTGGGGATCCGATGGATCAGTTCCATCGCAACGAAGCGATATCAGCTGTGGCCGATGATGGTTTCTTGGCTGAGGAAGACGATGATTACGAGGACCTTTACAACGACGTTAATGTCGGGGAAGGGTTTCTTCAGTCTTTGAGGAAGAACGAGGATTCAGGGTTTCGGAATGAGGAAATTGAGGAGAAAAAGACACAACCATCCGCGATGCCACCCGATACGGTTGGTGTTTCAATTCCAGCTGCAGCTGCTGCTGCTGGAGCTGGAGGCGGAGCTGGGGTCATGGATGCTGCAATCAGGCTTCCAGGAAGAGTAGATGGGATTCAAAATCAGGGATTTAGAGGGAATGAGATTGTTGTGAAGGGTGGGATGAGGGTTGAATTGGGGCAACCACCAGGTAAGTTAAATGAGATAGAGGAGCAGAGTGCTAATAATAATGTAGGAGTACAGGGGATGGGGCAGCAACCTCATGGTGGAGTTGTTGGGAATTCTGGGAGTGTGGGCAATGAGAGTTTGATGAGACaaggtggtggtggaggaggaaaTCTTAATAGGGTTGGTGGCAATGGGGTTGGTAATAACGTGAGTGGTGTCAGTATTGCTAATACTGGTGGAGCAGCTGTTGTGGGTGGTGGCACTGCCagcagtggtggtggtgggggtaCCATATTATTTGTGGGTGATTTGCACTGGTGGACTACTGATGCTGAGTTGGAGGCAGAACTTTGTAAGTATGGGCCAGTGAAGGAGGTCAAATTTTTTGACGAGAAGGCTAGTGGAAAATCGAAAGGGTATTGTCAGGTTGAGTTTTATGACCCTTCTGCTGCAACTGCTTGTAAGGAAGGTATGAATGGGCATATGTTTAATGGGCGGCCATGTATTGTTGCTTTTGCATCACCTTTCACAGTTAAGAGAATGGGAGAGGCCCAGGTAAATAGGAATCAACAGATGGCCCAATCTACAACTACTCAAGCAAGGAGAGGGCCTGCTGATCCTGTTGCTAAGACTGGTGGGAGTAACATTACTACTGGTGGAAACTACCAAGGTGGAGATGGCAACCGAGGCTATGGGAGGGGTAACTGGGGAAGAGGGAATAATCCTGGGATGGGAAATAGGGGCCCTGTTAATCCAATGAGGAATAGGGGTGGTGGGATGGGTGGTAGAGGCATAATGGGTAACGGTGGGAATGGATTTGGACAGGGTATTGGTGCTACCCCACCTCTGTTGCATCCTCAGTCAATGATGAATCAAGGTTTTGATCCTGCATTTGGTGCTCCTATGGGTAGAATGGGTGGCTATGGAGGCTTTCCAGGTGCTCCAGCACCTCCATTCTCCGGGATCTTGCCTACATTTCCTGCTGTTGGAGGTGTTGGTTTGCCTGGAGTTGCACCTCATGTTAATCCAGCATTTTTTGGAAGAGGGATGCCTATGAATGGTATGGGGATGATGCCCACATCTGGAGTTGATGGGCCTAATATGGGAATATGGTCAGATCCAAGTATGGGTGGATGGGGTAATGAAGAGCACGGCGGCGGGAGAGCTGGAGAATCAAGTTATGGGGAGGAAGCTGCTTCTGACCACCAGTATGGTGAGGTGAGTAATGATAGAGGTGGTTGGCCTAATGCCATGAGGGAAAAAGATAGAGGATCAGAAAGGGACTGGTCAGGTTCTTCTGAACGAAGGTATAGGGATGATAGAGAACAAGGATATGAGAGAGATGCTCCTAGAGAAAAGGATGCTGGCCAGGAACATGAATGGTCTGAAAGAAGACATCGTGATGATAGAGAAATAGGTCGGGAACGGTCTCGGGACCGTGAACGATCTAGGGACCGTGAtcgggaaagggaaagggatcGCGATAGAGATCGTGAGCGTGACAGGTACAAGGAAGACAGGGACCGATATGCAGACCATCATAGGTACCGAGACCGTGAAGCTGACCATGAAGATGAGTGGGAACGGGGAAGGTCATCAAGGACCCACAGCAAGTCACGATTATCACAGGAGGAGGATCATCATTCAAGATCTAGAGATGCTGATTATGGCAAGAGGAGACGACTTACCTCTGAGTAA 2103 0.476 MDEGEGGFGESGDPMDQFHRNEAISAVADDGFLAEEDDDYEDLYNDVNVGEGFLQSLRKNEDSGFRNEEIEEKKTQPSAMPPDTVGVSIPAAAAAAGAGGGAGVMDAAIRLPGRVDGIQNQGFRGNEIVVKGGMRVELGQPPGKLNEIEEQSANNNVGVQGMGQQPHGGVVGNSGSVGNESLMRQGGGGGGNLNRVGGNGVGNNVSGVSIANTGGAAVVGGGTASSGGGGGTILFVGDLHWWTTDAELEAELCKYGPVKEVKFFDEKASGKSKGYCQVEFYDPSAATACKEGMNGHMFNGRPCIVAFASPFTVKRMGEAQVNRNQQMAQSTTTQARRGPADPVAKTGGSNITTGGNYQGGDGNRGYGRGNWGRGNNPGMGNRGPVNPMRNRGGGMGGRGIMGNGGNGFGQGIGATPPLLHPQSMMNQGFDPAFGAPMGRMGGYGGFPGAPAPPFSGILPTFPAVGGVGLPGVAPHVNPAFFGRGMPMNGMGMMPTSGVDGPNMGIWSDPSMGGWGNEEHGGGRAGESSYGEEAASDHQYGEVSNDRGGWPNAMREKDRGSERDWSGSSERRYRDDREQGYERDAPREKDAGQEHEWSERRHRDDREIGRERSRDRERSRDRDRERERDRDRDRERDRYKEDRDRYADHHRYRDREADHEDEWERGRSSRTHSKSRLSQEEDHHSRSRDADYGKRRRLTSE 700
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g1981 700 MobiDBLite consensus disorder prediction 499 700 - -
Sto6g1981 700 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 232 310 IPR000504 GO:0003723
Sto6g1981 700 CDD RRM_CFIm68_CFIm59 234 307 - -
Sto6g1981 700 MobiDBLite consensus disorder prediction 61 76 - -
Sto6g1981 700 PANTHER CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR SUBUNIT 6-LIKE 1 699 - -
Sto6g1981 700 MobiDBLite consensus disorder prediction 1 23 - -
Sto6g1981 700 MobiDBLite consensus disorder prediction 550 700 - -
Sto6g1981 700 MobiDBLite consensus disorder prediction 59 83 - -
Sto6g1981 700 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 234 302 IPR000504 GO:0003723
Sto6g1981 700 MobiDBLite consensus disorder prediction 325 384 - -
Sto6g1981 700 Gene3D - 222 317 IPR012677 -
Sto6g1981 700 SUPERFAMILY RNA-binding domain, RBD 230 318 IPR035979 GO:0003676
Sto6g1981 700 PANTHER CLEAVAGE AND POLYADENYLATION SPECIFIC FACTOR 1 699 IPR034772 -
Sto6g1981 700 SMART rrm1_1 233 306 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto6g1981 Sto-Chr6 25286002 25288179 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto6g1981 202 308 Eukaryotic Initiation Factors Gene Family AT4G34110 30.841 2.65e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto6g1981 K14398 - gmx:100813748 849.351