Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Sto6g1881 | ATGGACAAGCGTCCTTTGCCATTGAAAAGCGTCAAAAGCAACGCACATGAGAATAAGAAGAAACTGTTATCCGGGAAGGAAGCGTTGGTGAAGCTTTTAAGATGGCATTTTGGTTTCTCTGATTTTAGAGGCAAGCAATTGGAGGCTATTCAAGCTGTACTCTCGGGAAGAGATTGCTTTTGTCTTATGCCAACTGGAGGAGGCAAGTCATTATGCTATCAGATCCCTGCATTGGTTAAAACAGGAATTGTTCTTGTTGTTTGTCCTTTAATAGCATTGATGGAAAACCAAGTGATGTCATTAAAGGAGAAAGGCATCGCTGCAGAATTTCTCTCCTCAACCCAAACAGCAGATGCAAAAAATAAGATCCACGAGGACCTTGATTCAGGAAAGCCCTCTGTAAGGCTGCTATATGTCACACCAGAATTGATAGCAACACAGGGTTTTATGTCAAAGCTGACAAAAATATATGCTAGAGGGTTGCTGAATCTCATTGCCATAGATGAGGCACATTGCATTTCAACTTGGGGCCATGACTTCAGACCTAGCTACCGTAAACTTTCATCCTTGAGAAGCCACCTTCCTGCTGTACCAATGTTAGCTCTGACTGCTACTGCTGCTCCTAAGGTTCAGAAGGATGTGGTAAAATCCTTGGACATGCAAAATCCATTAATACTAAAATCATCTTTTAATCgtcctaatatatattatgaagTTCGATACAAAGATCTTTTGGATGATGCTTATGCTGATCTGTCTAATATGCTCAAATCTAAGGGAGATGTCTGTGCAATTGTTTACTGCCTTGAGCGTTCAATGTGTGATGACCTGTCAGCTCATCTATCCCAAAACGGCATTTCCTGTGCTGCTTATCATGCAGGGTTAAATAATAAGCTGCGAACTTCTGTGCTAGATGATTGGATTTCATCCAAGATACAAGTTGTTGTTGCCACTGTTGCTTTTGGGGTAGTATGGACTACCCAATTGGTAGAATGGGATGCTCGATGGGGTACTAACAACCCCATCCCCATCAACCTTGAAGGCATTGATAGAAAGGATGTCAGAATTGTCTGCCACTTTAACATTCCAAAGTCAATGGAAGCATTCTATCAAGAGTCAGGAAGGGCAGGTCGTGATCAGTTGCCTTCTACAAGTTTGTTGTACTATGGAGAAGATGATCGCAAAAGAATGGaatttatattaagaaattcTGGAAGCAAGAATTTGCAGTCATCAAGCTCACAAGAAGAGTCATCCAAAAGGTCCCTTACTGACTTTAATCAGATGGTTGAATACTGTGAAGGATCTGGATGCCGAAGGAAAAAAATTCTTGAGAGCTTCGGGGAGCagGTGACTGTATCGCTATGTGGAAAATCTTGTGATGCTTGCAGACATCCAAACTTGGTCGCTAGATGTTTGGAGGATCTCACAACTGCTTGTACCTTACGCCCGAAAAATGGTTCCTCTCGAATATTTATCACCAGTTCTGCTGCTGCAGTTGATGAAGAACAAATATCTGAATTCTGGAATCGTGATGAAGAAGCAGGTGCAACAGAGGAAGATATATCCGATTCAGATGATGGTACTGATGTTGTGAACAACCTAGCTAGATCAAAGTCCAAATCCAGGTTGGGAGTGGATGACAAGATTGCATTGTTGCAACGTGCTGAGGAAAATTTCTATCGAAATGAAAATACTGATAAACAGAGAAACAAAATTGACAAGAATTCTATAACTGATGCAATGCGAGGAGCAAGCAGGGAAAAACTGCAAAATGCTCTAAGGCAGGCTCAGCAACGGCTTGACGACTTAAAGATTGTAGTGGGCACATCGGCATCTTTGCTTGAAGATGAATGCTACAAGAAATATAGCAAAGCTGGCAAATCATTCTATTTTTCACAAGTGGCTAGTACTGTAAGGTGGCTATCAACTGCAAATTCAATCGATCTGATGAATCGCCTCAGTGGGATTAATGCTTCCCCATCAAAGATTGTATTATCTGAAGATAAACATCCCCTTATTATTCCACCTTTATTAGAAGACACTTGTGCAAAAGAAGCCACTAGCAATGCCAATGCTGAGTCAGAAACTTCACCACCAGTGGAAAGTTCTCCCTTTAGTACCAAGTTGCCGCCAATTCCATCCTTCTCTGAGTTTGTTAACAATAGGAAAAGTAGGAAGGCAGGATCTGACCAAGTAAATAATACCACACAAAAGCACTCACCAAGAGCCGAAAAGAGGATGAGGCTATAG | 2253 | 0.4101 | MDKRPLPLKSVKSNAHENKKKLLSGKEALVKLLRWHFGFSDFRGKQLEAIQAVLSGRDCFCLMPTGGGKSLCYQIPALVKTGIVLVVCPLIALMENQVMSLKEKGIAAEFLSSTQTADAKNKIHEDLDSGKPSVRLLYVTPELIATQGFMSKLTKIYARGLLNLIAIDEAHCISTWGHDFRPSYRKLSSLRSHLPAVPMLALTATAAPKVQKDVVKSLDMQNPLILKSSFNRPNIYYEVRYKDLLDDAYADLSNMLKSKGDVCAIVYCLERSMCDDLSAHLSQNGISCAAYHAGLNNKLRTSVLDDWISSKIQVVVATVAFGVVWTTQLVEWDARWGTNNPIPINLEGIDRKDVRIVCHFNIPKSMEAFYQESGRAGRDQLPSTSLLYYGEDDRKRMEFILRNSGSKNLQSSSSQEESSKRSLTDFNQMVEYCEGSGCRRKKILESFGEQVTVSLCGKSCDACRHPNLVARCLEDLTTACTLRPKNGSSRIFITSSAAAVDEEQISEFWNRDEEAGATEEDISDSDDGTDVVNNLARSKSKSRLGVDDKIALLQRAEENFYRNENTDKQRNKIDKNSITDAMRGASREKLQNALRQAQQRLDDLKIVVGTSASLLEDECYKKYSKAGKSFYFSQVASTVRWLSTANSIDLMNRLSGINASPSKIVLSEDKHPLIIPPLLEDTCAKEATSNANAESETSPPVESSPFSTKLPPIPSFSEFVNNRKSRKAGSDQVNNTTQKHSPRAEKRMRL | 750 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Sto6g1881 | 750 | Pfam | DEAD/DEAH box helicase | 46 | 212 | IPR011545 | GO:0003676|GO:0005524 | |
| Sto6g1881 | 750 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 244 | 420 | IPR001650 | - | |
| Sto6g1881 | 750 | TIGRFAM | recQ_fam: ATP-dependent DNA helicase, RecQ family | 32 | 323 | IPR004589 | GO:0004386|GO:0006310 | |
| Sto6g1881 | 750 | Gene3D | - | 232 | 482 | IPR027417 | - | |
| Sto6g1881 | 750 | PANTHER | ATP-DEPENDENT DNA HELICASE Q-LIKE 3 | 3 | 731 | - | - | |
| Sto6g1881 | 750 | CDD | DEXHc_RecQ | 31 | 231 | - | - | |
| Sto6g1881 | 750 | MobiDBLite | consensus disorder prediction | 686 | 750 | - | - | |
| Sto6g1881 | 750 | SMART | helicmild6 | 275 | 380 | IPR001650 | - | |
| Sto6g1881 | 750 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 82 | 401 | IPR027417 | - | |
| Sto6g1881 | 750 | PANTHER | DNA HELICASE RECQ FAMILY MEMBER | 3 | 731 | - | - | |
| Sto6g1881 | 750 | Gene3D | - | 6 | 231 | IPR027417 | - | |
| Sto6g1881 | 750 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 50 | 224 | IPR014001 | - | |
| Sto6g1881 | 750 | CDD | SF2_C_RecQ | 232 | 389 | - | - | |
| Sto6g1881 | 750 | Pfam | RecQ zinc-binding | 392 | 464 | IPR032284 | - | |
| Sto6g1881 | 750 | Coils | Coil | 587 | 607 | - | - | |
| Sto6g1881 | 750 | MobiDBLite | consensus disorder prediction | 686 | 739 | - | - | |
| Sto6g1881 | 750 | Pfam | Helicase conserved C-terminal domain | 250 | 378 | IPR001650 | - | |
| Sto6g1881 | 750 | SMART | ultradead3 | 38 | 240 | IPR014001 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Sto6g1881 | Sto-Chr6 | 23498996 | 23513351 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Sto6g1881 | 35 | 403 | Eukaryotic Initiation Factors Gene Family | AT3G19760 | 21.228 | 9.84e-09 | 56.2 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Sto6g1881 | - | K10901 | gmx:100819601 | 1041.57 |