Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g1625 atggatgatgatgatcacCACTTCTCATGCCACACCCACAATATTGACACTGCTCCAATCTTTCCTCAACATCATTTGGAAATGGATGATGAAGAGGAGAGTATAAATTTGTTGAATCAATATTGCTTTGAAGAGGATGATGATCTATTgatcataaatatatttgatGATCATCAATCATATTCACATGGAAACACGTTGGAGAGTAATTTCCTGAATAATAATTCCAACAATTTCATTATTTGTGAGGGTACTGAATTAGGTGGTGGGAGTGGTAACACCAACACATACACTCTGTGTTTTGATAACTCAATTGTGTTACCAAACGACGTCATCGTGGAGGTGGAACATTGTGCTGTGCCCAACACGCATAATAATAAGAAGCGGTCTTCTAAGTCAGCTGGGTCCTCGTCTTGCTCCTCAATATCATCGTCTAAATGGAGAGGTAACGGTAACGGTAACGGGAAGGAGTTAACGGTGGATGCAAGAAAGAAGAGTAGAACTAGAACGTCAGCTGAAACCATTCATCACATCATGGCAGAGAGGAAGAGGAGACAGAATCTCACTCAGAAATTCATTGCCCTTTCTGCCACCATTCCTGGCTTGAAGAAGATAGATAAGGCGTCAGTACTATGCGAAGCCATCAACTACGTGAAACAACTTCaggagagagtgagagagttGGAGAAGATCAATACTGAGAAAACAACAACAAAGAGATCATCaatcacatcatcatcatcacatcatcatcattcagAAGTGTGCACAAGCAAAGGTGGTGCTACTACTACCACCACTACCAACAAATGCAATAATCAAGCTGCGAATTGTGATCAAGTATCGGCACTCCCAGAGATGGAAGCAAGAGTGTTGGGGAAGCAAGTTCTGATTCGTATTCACTGCGACGTCAGACAAAACGACATAATGCTGAATGTAATGGCACTTCTTCCACGCATCCATCTCTCTCTCCTCAGTTGTACGCTTCTGCCCTTTGGGAATTCGGCTTCCACCATCACCATTACTGCGCAGATGGAGGAAGAATACTGCTTGACGCCCAATGATTTACTCAACCACTTGAACCAGCATCATCTCTTCAACGACTCGcatcaacatcatcatcatctgcactag 1134 0.3871 MDDDDHHFSCHTHNIDTAPIFPQHHLEMDDEEESINLLNQYCFEEDDDLLIINIFDDHQSYSHGNTLESNFLNNNSNNFIICEGTELGGGSGNTNTYTLCFDNSIVLPNDVIVEVEHCAVPNTHNNKKRSSKSAGSSSCSSISSSKWRGNGNGNGKELTVDARKKSRTRTSAETIHHIMAERKRRQNLTQKFIALSATIPGLKKIDKASVLCEAINYVKQLQERVRELEKINTEKTTTKRSSITSSSSHHHHSEVCTSKGGATTTTTTNKCNNQAANCDQVSALPEMEARVLGKQVLIRIHCDVRQNDIMLNVMALLPRIHLSLLSCTLLPFGNSASTITITAQMEEEYCLTPNDLLNHLNQHHLFNDSHQHHHHLH 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g1625 377 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 175 237 IPR036638 GO:0046983
Sto6g1625 377 MobiDBLite consensus disorder prediction 124 152 - -
Sto6g1625 377 Coils Coil 218 238 - -
Sto6g1625 377 MobiDBLite consensus disorder prediction 232 262 - -
Sto6g1625 377 PANTHER HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN 2 365 - -
Sto6g1625 377 MobiDBLite consensus disorder prediction 237 262 - -
Sto6g1625 377 PANTHER BHLH TRANSCRIPTION FACTOR 2 365 - -
Sto6g1625 377 SMART finulus 178 227 IPR011598 GO:0046983
Sto6g1625 377 Gene3D - 160 237 IPR036638 GO:0046983
Sto6g1625 377 MobiDBLite consensus disorder prediction 123 182 - -
Sto6g1625 377 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 172 221 IPR011598 GO:0046983
Sto6g1625 377 MobiDBLite consensus disorder prediction 158 182 - -
Sto6g1625 377 Pfam Helix-loop-helix DNA-binding domain 176 222 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto6g1625 Sto-Chr6 17995196 17997060 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto6g1625 176 349 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G22770 38.202 2.18e-30 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Sto6g1625 HLH 2.3e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto6g1625 - - aprc:113850585 181.8