Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g1565 ATGGTGAACAATAAGTTTTTCTCAGGTCGCCAAAAGATTCCCATCGAAAAAATACCAAAGAAAAGCAATTTACAAGTCACATTCTCTAAGCGTCGTTCAGGACTCTTCAAGAAAGCGAGTGAGCTGTGCACTCTTTGTGGGGTAGAAATTGCACTGGTGGTGTTTTCTCCTGCGAACAAAGCCTTCTCTTTCGGCCACCCAGAAGTTGAACCCATAATAGATCGCTATCTCGCTCGAAATTTAGAGCAATTATTATCAGTTAGTGAGAATCGTCGTCGAAACTCTAACAACATTCGAATTCAAGATTTGAACACGCACCTCACGCAGGTTCTTGATCAATTGGAGATTGAGAAGAAGCAAGGGAAAGAGCTTGACCAAATGTTGAAAGCTGGGCAGAGACAATTCTGGTGGGAGAGACCCATTGAAGAGCTTGGTTTGCTTGAATTGGAGGAATTGAGGATTTCAATAGGGGAGCTTCAGAGGGAGGTTTCAAAAGAGAGCAGCAAAATCTTGATGGATCAAAGGGGAAATTATGGGACTAGTCAGACACCATCTGTCAGTCCCATCACTCGACACGTCACGTCGCTTTCCACTGTTCACCCCCCTCCACACTGCACGCCACCACCTAATATTATGCAGTCCATGGCTCTGCCTCCAGCCCATCCCGCTTGCCATAATATACTGTACTGGCTCCCAACATACTCTCAGCATCGAGCCCCCTATATAAACCCCAATTCCACCGAGCTTACACACACCTTCCAACACTTAGGAATTCTTTGGCTACTCCGCTATCGGAGGAACCTCTTATCTGTTAAGAAGCAAAAGGAGGAGCGAAGATCAAGGAAGAGAAAACAGGATGGGGAGGAGATCAAACAAGATCAACTCATAGGATGA 894 0.4553 MVNNKFFSGRQKIPIEKIPKKSNLQVTFSKRRSGLFKKASELCTLCGVEIALVVFSPANKAFSFGHPEVEPIIDRYLARNLEQLLSVSENRRRNSNNIRIQDLNTHLTQVLDQLEIEKKQGKELDQMLKAGQRQFWWERPIEELGLLELEELRISIGELQREVSKESSKILMDQRGNYGTSQTPSVSPITRHVTSLSTVHPPPHCTPPPNIMQSMALPPAHPACHNILYWLPTYSQHRAPYINPNSTELTHTFQHLGILWLLRYRRNLLSVKKQKEERRSRKRKQDGEEIKQDQLIG 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g1565 297 SMART madsneu2 8 67 IPR002100 GO:0003677|GO:0046983
Sto6g1565 297 Gene3D - 91 183 - -
Sto6g1565 297 CDD MADS_MEF2_like 9 77 IPR033896 GO:0000977|GO:0045944
Sto6g1565 297 PRINTS MADS domain signature 10 30 IPR002100 GO:0003677|GO:0046983
Sto6g1565 297 PRINTS MADS domain signature 30 45 IPR002100 GO:0003677|GO:0046983
Sto6g1565 297 PRINTS MADS domain signature 45 66 IPR002100 GO:0003677|GO:0046983
Sto6g1565 297 ProSiteProfiles MADS-box domain profile. 8 68 IPR002100 GO:0003677|GO:0046983
Sto6g1565 297 Gene3D - 20 90 IPR036879 GO:0003677|GO:0046983
Sto6g1565 297 MobiDBLite consensus disorder prediction 273 291 - -
Sto6g1565 297 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL62 7 213 - -
Sto6g1565 297 SUPERFAMILY SRF-like 9 85 IPR036879 GO:0003677|GO:0046983
Sto6g1565 297 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 17 64 IPR002100 GO:0003677|GO:0046983
Sto6g1565 297 Coils Coil 149 169 - -
Sto6g1565 297 PANTHER MADS BOX PROTEIN 7 213 - -
Sto6g1565 297 MobiDBLite consensus disorder prediction 273 297 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto6g1565 Sto-Chr6 16896948 16898940 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto6g1565 9 178 Type I MADS-box Gene Family AT5G60440 50.568 5.08e-50 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Sto6g1565 SRF-TF 6.7e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto6g1565 - - qsu:112040126 209.149