Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g1515 ATGACCCAAATGTTCGATGCGGTTAGGCATCTCGACAGATCTCGCAACAATTGGACAATCAAAGTTCGTGTTGTTAGGATATGGGATACTCCTCCATATCCCAAAACATGTGCACATCACAGAATGGATATGGGTTCCAAAATTGGTGGTTCGGTTAGGagtgtttttgccaataagtacAGAAATATTCTGAAAGAGGGTGGCGTATATATTATGAGTGGGTTCAATGTTGTATCTGCCAACAATACATTCCGTGCTACAAACCACGCATACAAACTCAATTTCCAATTCAGTTCGAGAATTGCACGTTCTAATGATGACGGGTCAATCCATCGTTATGGATTTGACTTTGTTTCTAGCAAAAGGATTGTTTCTGGTGAGCTAGACTATAACATATTAATAGATTTCATTGGTCGTGTCTGTAACATCTCCGAGCCTCAGTCAGCATCCAGTGATCCAAAGACTAAACGTATCACACTAGAACTTGAAGATTCACAGAGGAATGCAATGTTAATCACGTTGTGGGGAAGATATGCTGATCATGTCGTAGACTTTATGGCCAATTACTCAGAGGGTGCCATTGTGGTTGCCATTCAATTCTGCAAGATTAAGGAATATAGTGGTTCAATTTCATTGTCAAATTCAATGTTTACAACCCGTCTGTTCATTAATTTGGATGTCAACGAGCTCATTGAATTTCGTCAAGAAGCATTTAATGGGTTGCCTCTATCATTAATTGACGATCTATATCACTCCGGTGACAGAGCTGTAGTCTGCAAGCGGTGCGCTAAGAAGTTGGAGCCCGATGGGACGATATTTTTCTGCAATAAATGTCAAGGGTTGGTTAACACATCGACATCTCGGTTCAAAATTGAGCTAATGGTTATGGACGCTTCGGGTACTGCAAATATTACCGTGTTCGATCGTGAAGCTTCCAACTTTCTTGGAATGTTTGCCATTGAACTACGCAAAGAACACTTAGAGAATGTGGGTGACCCGTCAATATGGCCTACGAAGCTTGAtagtttttcaagaaaaatcTTTGTTTTCAAGGTGGCTGTTAAGATATCGCAGTGGAATGAGCTTCCATCCTTTACTATTGATCTCAGCTCTAACAATGATGACTTGATTACACCTGTGAAAGACAAATCTGCCACAATAGTTGGTTTGGAAGGACGCAGGCTTTCTTTTGTAGATGATTCTAATTCGCCTACTACTGCAACACTGAGTAGCGGCAAGAGATCTGTCGTTGAGGTTTCTGATGATTGCACTTCCCCCATGGACATGTCTATGAATGTTGACATTCATACAAAGAGGATCAAGATTGAGAAGTGTTTGGAGGCTTAA 1347 0.4001 MTQMFDAVRHLDRSRNNWTIKVRVVRIWDTPPYPKTCAHHRMDMGSKIGGSVRSVFANKYRNILKEGGVYIMSGFNVVSANNTFRATNHAYKLNFQFSSRIARSNDDGSIHRYGFDFVSSKRIVSGELDYNILIDFIGRVCNISEPQSASSDPKTKRITLELEDSQRNAMLITLWGRYADHVVDFMANYSEGAIVVAIQFCKIKEYSGSISLSNSMFTTRLFINLDVNELIEFRQEAFNGLPLSLIDDLYHSGDRAVVCKRCAKKLEPDGTIFFCNKCQGLVNTSTSRFKIELMVMDASGTANITVFDREASNFLGMFAIELRKEHLENVGDPSIWPTKLDSFSRKIFVFKVAVKISQWNELPSFTIDLSSNNDDLITPVKDKSATIVGLEGRRLSFVDDSNSPTTATLSSGKRSVVEVSDDCTSPMDMSMNVDIHTKRIKIEKCLEA 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g1515 448 Pfam Replication protein A OB domain 129 215 IPR031657 -
Sto6g1515 448 Gene3D - 109 240 IPR012340 -
Sto6g1515 448 SUPERFAMILY Nucleic acid-binding proteins 9 109 IPR012340 -
Sto6g1515 448 CDD RPA1_DBD_A_like 19 101 - -
Sto6g1515 448 PANTHER REPLICATION PROTEIN A 70 KDA DNA-BINDING SUBUNIT A 11 235 - -
Sto6g1515 448 Pfam Replication factor-A C terminal domain 259 362 IPR013955 -
Sto6g1515 448 SUPERFAMILY Nucleic acid-binding proteins 115 235 IPR012340 -
Sto6g1515 448 Gene3D - 7 106 IPR012340 -
Sto6g1515 448 PANTHER REPLICATION FACTOR A 1, RFA1 11 235 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Sto6g1515 448 CDD RPA1_DBD_B_like 135 235 - -
Sto6g1515 448 SUPERFAMILY Nucleic acid-binding proteins 258 362 IPR012340 -
Sto6g1515 448 Gene3D - 256 381 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto6g1515 Sto-Chr6 16328269 16330523 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto6g1515 5 355 Core DNA Replication Machinery Family AT5G45400 22.087 3.45e-14 73.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto6g1515 - - soe:110779942 167.548