Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g1447 ATGTATTTTATGGCAGACGATGAAGAGGAGGTTAAGGAGTCAATAGATGAATATGAAAAAGATGAGCGCTTAGATCTGGATGATAATGATCCGGAGTATGAACATGAGGAGTATGGTGGAGTTGATTATGATGAGAAGGAAATTGAACAAGATGAGGTTCAGGAGGTAGGAGATGAATTAGAGGAAGAACCTGAAGGTGAAGAAGAGGTTGAGGAGGAAGTGGAAGATGTTCATGGTGAACTTGAGGGTGAAGAGGATGATGAACATACTGGAGAGGAGCATGAGCATGAGCATGAGCATGCAGAGATGGGTGATGTTGAGGAAGAGGAACACCATGAAGGtttgaaggagaggaggaagcgCAAGGAATTTGAAGTGTTCGTTGGGGGCTTAGATAAAGATGCTACTGAAGATGATCTGAGGAAGGTTTTTAGTGCAGTTGGTGAGGTTACTGAAGTCAGGCTGATGATGAATCCTCAGACTGAAAAGAACAAGGGTTTTGCATTCCTGCGTTTTGCAACTGTGGAACAAGCAAAGAGAGCTGTAACAGAGCTAAAAAATCCAGTGATTAATGGCAAACAATGTGGTGTTACTCCTAGTCAGGACAGTGATACCCTCTTTTTGGGTAATATATGCAAGACGTGGACAAAGGAAGCTTTAAAAGAGAAGTTGAAACATTATGGAGTTGAAAATGTTGAGGATTTGACTTTAGTAGAAGATAGTAACAATGAGGGAATGAACCGTGGATTTGCATTTTTAGAATTTTCATCTCGCTCAGATGCTATGGATGCCTTTAAGCGATTGCAGAAGAGAGATGTTGTGTTTGGAGTTGACAGACCTGCAAAGGTTTCCTTTGCAGATTCATTTATAGACCCGGGTGATGAAATAATGGCACAGGTTAAAACTGTGTTCATTGATGGCTTGCCTCCTTCATGGGACGAGGATCGTGTACGGGTTCTTCTCAAGAGATATGGTGAAATTGAGAAGATTGAGCTTGCCAGAAACATGCCTTCTGCCAAGAGGAAGGACTTTGGATTTGTTACATTTGATACCCATGATGCTGCTGTGACGTGTGCTAAAAGCATTAACAATGCTGAGTTAGGTGAAGGAGACAGCAAGGCAAAAGTTAGGGCCAGATTATCGAGGCCACTTCAGAGAGGCCATGGAAAACATGTTGGTCGTGGGGACTTTCGTTCTGGTCGAGGTCCTGGAAGAGTTGCAAGGCCTTCATGGAGTCGACCTTCACCTCGTAGTTTTCCTCCCCGTGGGATAAGAAGCATTGGAAGTCGTGTACCACCAGTGAGGCCTGTTAGTGTGAGAGAAAGACGTCCAATAATGTCCGTGCCAGTAAGAGCCAGGCCGGTGGCCCCTCCAGCCAGATCCTATGATAGGAGACCAGCTGttCCTGCATATCCAAAAAGTAGCATGAAAAGAGATTATGGTCGACGTGAGGATCTACCACCACCAAGAAGCAGAGTAGCTGCAGATTATGGTTCTAGGGTGGCCTCTGAGAGACGCCCTTCCTATAGAGATTATCCAGCTCGTGGCCCTACCTACTCTGAACTTCCTAGAAGTACAACACGAGCTGCACCGAGGAGGGGTTATGTGGATGATGGCTATAGCCAAAGATTTGAGaggcctcctcctcctccacctccCCATCCAAGTTACCGTGAAAATCGCCCACGTGATTATGACACTATCTCTGGCTCGAAACGTCAATATGCTGCCATAgaTGATGTTCCTCCACGATATGCAGACACTGGTGCTCGCCAATCAAGAGCTCGATTGGACTATGACTATGGAGGTAGTGCTTCACAGTATGGGGATGCTTATGGTGATAGACTTGGGAGATCTAGTGTCGGATATGGTGGCAGCAGGAGTTCTCTGTCCAGTCATGACTCACATGGGATGTATAGCAGTCGCCAGGGCATGAGTTACAGTGGAGGTTCTTTTGGCGGTAGTGATGTTGGTGGTATGTACTCATCAAGTAGTTATGGTGGTGAATACATGTCTCGTGGAAATGATGTTGGTGGCAGCTCATATTCATCAATGTATTCAGGCAGAGGTGTTGGTGGTAGTGGCAGTTACATGGGTGGTAGTGGATCTGGGTCTTATTATTAA 2124 0.443 MYFMADDEEEVKESIDEYEKDERLDLDDNDPEYEHEEYGGVDYDEKEIEQDEVQEVGDELEEEPEGEEEVEEEVEDVHGELEGEEDDEHTGEEHEHEHEHAEMGDVEEEEHHEGLKERRKRKEFEVFVGGLDKDATEDDLRKVFSAVGEVTEVRLMMNPQTEKNKGFAFLRFATVEQAKRAVTELKNPVINGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVENVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVVFGVDRPAKVSFADSFIDPGDEIMAQVKTVFIDGLPPSWDEDRVRVLLKRYGEIEKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDSKAKVRARLSRPLQRGHGKHVGRGDFRSGRGPGRVARPSWSRPSPRSFPPRGIRSIGSRVPPVRPVSVRERRPIMSVPVRARPVAPPARSYDRRPAVPAYPKSSMKRDYGRREDLPPPRSRVAADYGSRVASERRPSYRDYPARGPTYSELPRSTTRAAPRRGYVDDGYSQRFERPPPPPPPHPSYRENRPRDYDTISGSKRQYAAIDDVPPRYADTGARQSRARLDYDYGGSASQYGDAYGDRLGRSSVGYGGSRSSLSSHDSHGMYSSRQGMSYSGGSFGGSDVGGMYSSSSYGGEYMSRGNDVGGSSYSSMYSGRGVGGSGSYMGGSGSGSYY 707
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g1447 707 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 6 707 - -
Sto6g1447 707 Gene3D - 204 287 IPR012677 -
Sto6g1447 707 PANTHER RNA RECOGNITION MOTIF 6 707 - -
Sto6g1447 707 SMART rrm1_1 205 284 IPR000504 GO:0003723
Sto6g1447 707 SMART rrm1_1 302 377 IPR000504 GO:0003723
Sto6g1447 707 SMART rrm1_1 125 198 IPR000504 GO:0003723
Sto6g1447 707 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 204 288 IPR000504 GO:0003723
Sto6g1447 707 MobiDBLite consensus disorder prediction 9 90 - -
Sto6g1447 707 SUPERFAMILY RNA-binding domain, RBD 120 202 IPR035979 GO:0003676
Sto6g1447 707 Coils Coil 67 87 - -
Sto6g1447 707 Coils Coil 43 63 - -
Sto6g1447 707 Gene3D - 290 408 IPR012677 -
Sto6g1447 707 MobiDBLite consensus disorder prediction 380 431 - -
Sto6g1447 707 Gene3D - 64 199 IPR012677 -
Sto6g1447 707 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 301 383 IPR000504 GO:0003723
Sto6g1447 707 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 124 202 IPR000504 GO:0003723
Sto6g1447 707 SUPERFAMILY RNA-binding domain, RBD 203 368 IPR035979 GO:0003676
Sto6g1447 707 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 126 194 IPR000504 GO:0003723
Sto6g1447 707 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 206 272 IPR000504 GO:0003723
Sto6g1447 707 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 303 368 IPR000504 GO:0003723
Sto6g1447 707 Coils Coil 4 24 - -
Sto6g1447 707 MobiDBLite consensus disorder prediction 91 117 - -
Sto6g1447 707 MobiDBLite consensus disorder prediction 454 592 - -
Sto6g1447 707 MobiDBLite consensus disorder prediction 1 117 - -
Sto6g1447 707 MobiDBLite consensus disorder prediction 476 490 - -
Sto6g1447 707 CDD RRM_SF 303 368 - -
Sto6g1447 707 CDD RRM_SF 126 197 - -
Sto6g1447 707 CDD RRM_SF 206 273 - -
Sto6g1447 707 MobiDBLite consensus disorder prediction 623 642 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto6g1447 Sto-Chr6 15453260 15457398 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto6g1447 126 363 Eukaryotic Initiation Factors Gene Family AT1G49760 23.904 3.76e-14 74.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto6g1447 - - gmx:100779340 919.457