Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g1261 ATGGCATCGAGGAATCAACCCCTTACTTCCATGAATCCGGTGCAGCACCTAGATACAACTGTCAAAGTACGAGTTGTTCGTTTGTGGTATGTTCCACCTTACTCCTCCAATATGAGCAAACCTAATCCAGGTGTTGCTGCAATTCAAATGGTTTCATGTGACTCTAAGAATTGCACTATTGGTGCAAGTGTACCCAGTGTGTACCTGAATAAATTCAAAGGTTCTTTGGTTGAAGGTGGTGTTTACTTTATTTCACGTTTTGGAGTTGGTGGGAGTGGTGGCAATTTCCGTATTACCACTCATTCTTTTAAGATCAACTTCCAATTTGGTACACGCGTAATGCCTACTGTTGATGACcctaaaattcataaatatgGCTTTGAGTGGGTGATAGCAGAATCTATAAGCTCTGGCAATGCAGACGAGAAAACTCTAGTTGATGTCATTGGTTTGCTGACTAACATAGGAGATGTCATCCAGTCTTCTAAAGAGGACGTATCCTCCAAAAGAGTTACGATTGAGATAGAAGATAGAGcAAGGTCCAGGGTGAGTGCTACGCTTTGGGGACATTACTGTGATCAGATTGAAAACTTCATGAACAAGCATAAAGAAGGTTCTGTTGTTATTGCTTTGCAATACTGCAAGATCAAAGTATTTAATGGTCAGCGTAGTCTTTCCAATTCCATGCATGCAACGCGTATCCTGATCAACGAAGATCTTGAAGAATTCATGGGATTCCATGATCAAGATTCTGGATCTAATCTGAGAAGTCCTTTGTTAGGAAGTTCTTCGTCATCTGTCAAATCTGTTTCACGTTATGCTGATCCTTTTAATGCAGTATCCTTCTCATGCATTAGTGAGCTCCTCCTCTTTGCAGATGAGTCTGTTCATTGTATTGTTGGTTCTGTGCTCAAGGTTAACACAGAGAAAGCTTGGTTTTATAATGCTTGCACAAAATGTAAAAGCAAAGTTGAGGAAGATGGTGAAAGCTTCTATGGTAATCACTGTTCAACCCCGATGTCCACTGCCATCCCGAGGTTTAGGATTGAATTGGTCGTTATTGATGACACTGCTCCTgctaattttactttatttgatCGTGATGCAGCAAGTTTTTTGGGAGTATCTGCGGAATTTATGAAGAACAAAGCAGAAATGGTGGGGATGAAATTGGCAACGTGGAGTCCTACTCCTTTGTTAACATTCCAGGCAATGTCTTGGGATCAAGACCTTATTAAGAAGTTATCAGGTGAGTCACCTCTAGATATTAACCATGACAAATGTTTTACTGCTAATAGAATTATTTTCTACCTCTGTAATCCACATATTGGTGTAGACATTTCTAGTGAGAGTATGACTCCTAATCAAGAAGCTGAGAAGATTAATCTTGATAAAGAATTAGCGAACCCAAACAATGCTATGGAAGGTCATTCTTTGTCATTTTCTGAAGAAGTTACATCTAAGGATCGTTACACCACTAGCAGTAACATGAGGAATTCATCTGAAGAGTCCATTACTAAGAGAAGAGTCAATGACTTTAATGAAGTCAACACTGTTAGCCAGGATGTTCTTATGAAAGTTAAACTGGAgaagttataa 1599 0.3871 MASRNQPLTSMNPVQHLDTTVKVRVVRLWYVPPYSSNMSKPNPGVAAIQMVSCDSKNCTIGASVPSVYLNKFKGSLVEGGVYFISRFGVGGSGGNFRITTHSFKINFQFGTRVMPTVDDPKIHKYGFEWVIAESISSGNADEKTLVDVIGLLTNIGDVIQSSKEDVSSKRVTIEIEDRARSRVSATLWGHYCDQIENFMNKHKEGSVVIALQYCKIKVFNGQRSLSNSMHATRILINEDLEEFMGFHDQDSGSNLRSPLLGSSSSSVKSVSRYADPFNAVSFSCISELLLFADESVHCIVGSVLKVNTEKAWFYNACTKCKSKVEEDGESFYGNHCSTPMSTAIPRFRIELVVIDDTAPANFTLFDRDAASFLGVSAEFMKNKAEMVGMKLATWSPTPLLTFQAMSWDQDLIKKLSGESPLDINHDKCFTANRIIFYLCNPHIGVDISSESMTPNQEAEKINLDKELANPNNAMEGHSLSFSEEVTSKDRYTTSSNMRNSSEESITKRRVNDFNEVNTVSQDVLMKVKLEKL 532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g1261 532 CDD RPA1_DBD_C 285 382 IPR013955 -
Sto6g1261 532 Pfam Replication protein A OB domain 139 229 IPR031657 -
Sto6g1261 532 Pfam Domain of unknown function DUF223 52 125 IPR003871 -
Sto6g1261 532 SUPERFAMILY Nucleic acid-binding proteins 291 385 IPR012340 -
Sto6g1261 532 CDD RPA1_DBD_B_like 147 243 - -
Sto6g1261 532 SUPERFAMILY Nucleic acid-binding proteins 135 248 IPR012340 -
Sto6g1261 532 MobiDBLite consensus disorder prediction 473 501 - -
Sto6g1261 532 SUPERFAMILY Nucleic acid-binding proteins 8 123 IPR012340 -
Sto6g1261 532 CDD RPA1_DBD_A_like 20 113 - -
Sto6g1261 532 Gene3D - 5 115 IPR012340 -
Sto6g1261 532 MobiDBLite consensus disorder prediction 472 505 - -
Sto6g1261 532 Gene3D - 278 396 IPR012340 -
Sto6g1261 532 PANTHER REPLICATION FACTOR A 1, RFA1 18 382 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Sto6g1261 532 Gene3D - 121 254 IPR012340 -
Sto6g1261 532 PANTHER REPLICATION PROTEIN A 70 KDA DNA-BINDING SUBUNIT B-LIKE 18 382 - -
Sto6g1261 532 Pfam Replication factor-A C terminal domain 301 385 IPR013955 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto6g1261 Sto-Chr6 12451404 12459803 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto6g1261 1 395 Core DNA Replication Machinery Family AT5G08020 22.222 4.01e-12 67.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto6g1261 - - soe:110778367 181.03