Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g1246 ATGGAGAAAGTAGCTGGTTTAGAGGAAGCTCCTGTGATGCCAGTTCTGCATCCGCCACCTTCTATTGCTCCGTATAAAATGGAGCCCGAGCAAGCAGGCCATACTAAGTATTCTATTGCCAATAGGTGTGGGGTTGGGACTGCAGGGAAAAGCATGCCATTGCTTGCCAATCATTTCCAAGTTTCTATTAATGGTCTAGATGCAATATTTTTCCAGTATAGTGTTTCTATTACTTCAGAAGATGGTAGAGCTATTGAAAGCAGGGGCATTGGGAGAAAACTGATTGATAGGCTTTACCAAACTTACTCTTCTGAACTTGGTGGCAAAAGATTTGCCTATGACGGAGAGAGAACTTTGTACACAGTGGGTCCTCTGCCCAATAAAAAGTTTGACTTTACAGTAGTACTTGAGGAGTCATTAGCAAAACGCAGTAGTACTGGAAGTCCTGCAGCTGATGGAAGCCTAAGTGAAGGAACCAAAAGGTCAAAACATTCTTTTCAGTCAAAGGCTTTTAAGGTAGAGATAAGTTTTGCGGCCGAAGTACCCCTACAGTCCATTGCTCTTGCCCTGAAAGGAGTTGAGTCAGACTCTAATGCTCAGGATGCTTTGAGAGTGCTTGATATCATACTGAGGCAAAAAGCAGCTAGCATGGGTTGTCTCTTGGTAAGACAATCATTCTTTCATGATGACTCTAAGAATTTCATTGAGGTTGGAGGCGGAGTCATGGGACTTCGAGGTTTTCATTCCAGCTTTCGCCCCACAAAATGTGGATTGTCTCTCAATATGGATGTGTCCACAACGATGATCTTAACCCCTGGACCTGTAATAGAATTTCTCCTATCCAATCAGAATGTGAGGGAACCCCGTTATATTGACTGGGCAAAGGCCAAGAAAATGCTCAAAAATTTAAGGGTGCGTGCAATACATCGTAACCAGGAATATAAAATTATAGGCTTGAGTGAGAAACCCTGCAGTCAGCAACtTTTCAGTATGaggatgaaaaatgattatagCAGTAATGAAGGGCAGACAGTGGATATTACTGTTTACGAGTATTTTGCTAAACACCGTGGCATAGAACTGACCTCTGCATTCCTTCCTTGCCTTGATGTTGGTAAACCAAAACGACCCAACTATCTGCCCATGGAGCTCTGTTCACTTGTTTCCCTTCAGCGTTATAGAAAGGCATTATCCCCAATGCAGAGAGCTTCTTTAGTTGAGAAATCACGACAAAAGCCTCAAGATAGAATCAAAATTCTGGCAAATGCTGTGTCAAATTATCGCTATGATGAAGACCCTGTTCTTGCTGCATGTGGTATCACTATTGAGAAGCAATTGACTCAAGTTGAAGGTCGAGTTCTTGAGACCCCAAAGTTAAAAGTTGGTAAGAATGACGACTGCTTCCCTCGTAATGGAAGATGGAACTTTAATAACAAGACACTTCTACAACCAGTTCGCATTGATCTCTGGGCTGTTGTCAATTTTTCTTCTCGTTGTGATACTAGTTACATTTCGAGGGAACTTATTAAATGTGGAATGAAGAAGGGAATTCACATTGAACGTCCATATACTTTAATAGAGGAAGATTCGCATTTGAGAAGATCTAGCCCTGTTGCAAGGGTTGAAAAGATGTTTGAGCTGCTTTATGCAAAGCTCCAAAAAGAACCAACGTTAATACTGTGTGTCTTGCCAGAGAGGAAAAATTGTGATATCTATGgACCTTGGAAGAAGAAATGTCTGAGTGAAGTCGGTGTAGTCACACAATGCATTTCGCCTTTGAAGATCAATGATCAATACCTTACTAATGTACTTCTTAAAATCAATTCTAAGCTTGGAGGAATAAATTCTTTGTTGGCCGTAGAGCATTCTGTGTCTCTTCCACTGATAAAAGACACTCCAACCATGATTTTAGGGATGGATGTCTCTCATGGCTCCCCTGGTCGATCTGACATCCCATCAATAGCAGCAGTTGTTGGATCTCGATGTTGGCCACTAATTTCAAGGTATAGGGCATCTGTGCGAGCACAATCATCTAAGGTGGAGATGATTGATGCTCTATACAAGCCTTTGGCTGATGGGAAAGATGATGGCATCATGAGAGAACTGCTTTTGGATTTCTATGATTCTAGTAATGGACGAAAACCAGCTCAAATTATTGTCTTCAGGGATGGAGTTAGTGAATCACAATTTAATCAGGTTTTGAACATTGAGCTGGATCAGATAATTAAGGCGTATCAACATCTTGGAGATGTTGATGCACCCAAATTCACAGTAATTGTGGCGCAAAAGAATCACCATACAAAGTTGTTTCAAGCTAGTGGTCCAGAAAACGTCCCTCCTGGGACAGTCGTTGACACAAAAGTTGTGCATCCAAGGAATTACGATTTCTACATGTGTACCCATGCAGGGATGCTTGGAACTTCTAGGCCGGCACATTATCATGTGTTGCTTGACGAGATTGGTTTCTCACCAGATGGCTTACAAAACTTAATCCATTCACTGTCTTATGTGTACCAGAGGAGCACATCTGCAATTTCAGTTGTGGCACCCGTACACTATGCCCACCTCGCTGCGGCTCAGATGGGGCAATTTTTGAAGTTTGATGATTTATTAGAAACATCTTCAAGTTTTACTTCCGAGGGAGATGTCCCTATCCCAGAGCTTCCAAGGTTGCATCCGAATGTTCAGAGTAGCATGTTCTTCTGTTAA 2709 0.4175 MEKVAGLEEAPVMPVLHPPPSIAPYKMEPEQAGHTKYSIANRCGVGTAGKSMPLLANHFQVSINGLDAIFFQYSVSITSEDGRAIESRGIGRKLIDRLYQTYSSELGGKRFAYDGERTLYTVGPLPNKKFDFTVVLEESLAKRSSTGSPAADGSLSEGTKRSKHSFQSKAFKVEISFAAEVPLQSIALALKGVESDSNAQDALRVLDIILRQKAASMGCLLVRQSFFHDDSKNFIEVGGGVMGLRGFHSSFRPTKCGLSLNMDVSTTMILTPGPVIEFLLSNQNVREPRYIDWAKAKKMLKNLRVRAIHRNQEYKIIGLSEKPCSQQLFSMRMKNDYSSNEGQTVDITVYEYFAKHRGIELTSAFLPCLDVGKPKRPNYLPMELCSLVSLQRYRKALSPMQRASLVEKSRQKPQDRIKILANAVSNYRYDEDPVLAACGITIEKQLTQVEGRVLETPKLKVGKNDDCFPRNGRWNFNNKTLLQPVRIDLWAVVNFSSRCDTSYISRELIKCGMKKGIHIERPYTLIEEDSHLRRSSPVARVEKMFELLYAKLQKEPTLILCVLPERKNCDIYGPWKKKCLSEVGVVTQCISPLKINDQYLTNVLLKINSKLGGINSLLAVEHSVSLPLIKDTPTMILGMDVSHGSPGRSDIPSIAAVVGSRCWPLISRYRASVRAQSSKVEMIDALYKPLADGKDDGIMRELLLDFYDSSNGRKPAQIIVFRDGVSESQFNQVLNIELDQIIKAYQHLGDVDAPKFTVIVAQKNHHTKLFQASGPENVPPGTVVDTKVVHPRNYDFYMCTHAGMLGTSRPAHYHVLLDEIGFSPDGLQNLIHSLSYVYQRSTSAISVVAPVHYAHLAAAQMGQFLKFDDLLETSSSFTSEGDVPIPELPRLHPNVQSSMFFC 902
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g1246 902 Pfam PAZ domain 276 405 IPR003100 GO:0005515
Sto6g1246 902 CDD PAZ_argonaute_like 272 388 - -
Sto6g1246 902 Pfam Argonaute linker 2 domain 418 460 IPR032472 -
Sto6g1246 902 Pfam Piwi domain 558 866 IPR003165 GO:0003676
Sto6g1246 902 SUPERFAMILY PAZ domain 267 429 IPR036085 GO:0005515
Sto6g1246 902 SMART PAZ_2_a_3 273 411 IPR003100 GO:0005515
Sto6g1246 902 CDD Piwi_ago-like 433 860 IPR045246 -
Sto6g1246 902 SMART Piwi_a_2 558 866 IPR003165 GO:0003676
Sto6g1246 902 Pfam N-terminal domain of argonaute 50 210 IPR032474 -
Sto6g1246 902 Gene3D - 453 619 - -
Sto6g1246 902 Gene3D - 626 902 IPR036397 GO:0003676
Sto6g1246 902 ProSiteProfiles Piwi domain profile. 558 866 IPR003165 GO:0003676
Sto6g1246 902 PANTHER PROTEIN ARGONAUTE 6 32 901 - -
Sto6g1246 902 ProSiteProfiles PAZ domain profile. 297 389 IPR003100 GO:0005515
Sto6g1246 902 Pfam Argonaute linker 1 domain 222 269 IPR014811 -
Sto6g1246 902 SUPERFAMILY Ribonuclease H-like 545 864 IPR012337 -
Sto6g1246 902 Gene3D paz domain 266 393 - -
Sto6g1246 902 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 32 901 - -
Sto6g1246 902 SMART DUF1785_2 220 272 IPR014811 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto6g1246 Sto-Chr6 12151778 12159135 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto6g1246 38 902 Eukaryotic Initiation Factors Gene Family AT5G43810 37.528 2.30e-174 530
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto6g1246 K11593 - jre:108995817 1395.18