Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g1213 ATGTCAATGCAGAAAAACATGAGCATCTGCGTGAACGGACAGTCTCAGGTGCCTCCTGGGTTTCGGTTCCATCCAACGGAAGAGGAGCTATTGCAGTACTACCTCAGGAAGAAGGTGTGCTACGAGAAGATCGACCTCGATGTTATTCGTGATGTGGATCTCAACAAGCTCGAGCCTTGGGATATTCAAGAGAAGTGCAAAATAGGAAGCACCCCGCAAAACGATTGGTACTTCTTCAGCCACAAGGACAAGAAGTATCCGACGGGAACTCGAACGAACCGGGCCACGGCAGCCGGGTTCTGGAAGGCGACGGGTCGGGACAAGGTGATCTACGGCAACGGGAAGAGGATTGGAATGAGGAAGACACTGGTTTTCTACAAAGGCAGAGCCCCTCACGGCCAAAAGTCGGATTGGATCATGCATGAGTATAGACTTGAAGACAATCTCACCTCCGAAACCTGCATTGTGACGACGAATGTGATGGGAGATGGAGGGCAGGAGGAAGGGTGGGTGGTGTGTAGGATATTCAAGAAGAAGAACCATCTGAAAACCCTAGAAAGCCCCTTGGGTTCAGGGGAAACACGAAGGACGAGCCAGCACCAGCACCGAAACGATGTCGTGTTCGATTCAtgtgaggaggaggaggagggaggTTTGGAGCAAATACTTGAGCAAATGGGAAGAAGCTGctgcaaagaagaagaagaagaacaacaaAACGATCCCAACGGTTATAACAAGAATGGGATTAGAATGGGAAGAGCAATTGAGGAGTACCAGCATGAGGACAGATTCTCGAAGCTTCCACGCTTAGAAAGCCCGAAATCCAACACCAACGAATACCATCCCATGATGGAAGGCTCATACTCATACCCATACCCGTACCCGTACCCATATTCATTccatcatcatcaacatcaaCATCATGACGATGAAATGGAAGGAGGAGGAGGCATGATCACCAACTGGGCAGCACTGGATCGTTTGGTGGCGTCGCAGCTGAATGGCCAAAGCGAGGATTCCAGCTTCAACGCAGCTTACactagtaataataataatactactaCTACAACTACAGTAGACCCCACCATGGGGTATTGCTCTAGTGATCATCTTCAACTTCCCACCCTACGATCATCatcagcatcatcatcatccatatcatcatcattttctactgctcctaataataataataataattacatcACCGCCACGCACGACAACTACAGTAACACCACCACCCAGATTGACCTCTGGAACTTTGCCCGATCAACATCATCCTTACTACTCTCTACTTCCTCCCAACCCCTCTGA 1317 0.4404 MSMQKNMSICVNGQSQVPPGFRFHPTEEELLQYYLRKKVCYEKIDLDVIRDVDLNKLEPWDIQEKCKIGSTPQNDWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKVIYGNGKRIGMRKTLVFYKGRAPHGQKSDWIMHEYRLEDNLTSETCIVTTNVMGDGGQEEGWVVCRIFKKKNHLKTLESPLGSGETRRTSQHQHRNDVVFDSCEEEEEGGLEQILEQMGRSCCKEEEEEQQNDPNGYNKNGIRMGRAIEEYQHEDRFSKLPRLESPKSNTNEYHPMMEGSYSYPYPYPYPYSFHHHQHQHHDDEMEGGGGMITNWAALDRLVASQLNGQSEDSSFNAAYTSNNNNTTTTTTVDPTMGYCSSDHLQLPTLRSSSASSSSISSSFSTAPNNNNNNYITATHDNYSNTTTQIDLWNFARSTSSLLLSTSSQPL 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g1213 438 ProSiteProfiles NAC domain profile. 17 178 IPR003441 GO:0003677|GO:0006355
Sto6g1213 438 PANTHER NAC DOMAIN-CONTAINING PROTEIN 12 8 356 - -
Sto6g1213 438 Pfam No apical meristem (NAM) protein 18 145 IPR003441 GO:0003677|GO:0006355
Sto6g1213 438 Gene3D NAC domain 26 183 IPR036093 GO:0003677|GO:0006355
Sto6g1213 438 MobiDBLite consensus disorder prediction 185 204 - -
Sto6g1213 438 SUPERFAMILY NAC domain 6 178 IPR036093 GO:0003677|GO:0006355
Sto6g1213 438 MobiDBLite consensus disorder prediction 378 398 - -
Sto6g1213 438 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 8 356 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto6g1213 Sto-Chr6 11624063 11625584 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto6g1213 3 379 NAC Transcription Factor Family AT2G46770 55.039 1.55e-129 377
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Sto6g1213 NAM 5.2e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto6g1213 - - ahf:112734309 446.047