Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g1204 ATGGATGATCTAATTATCTCcccttcttcgtcttcttcccTGGTCTCTCTCCCCCACGAAACCCAACCTTCCCTTCACCAGAAGCTTCAATTTCTACTCCACAGCCAACCCGAGTGGTGGGTCTACGCCATTTTCTGGCAGATCTCAAACGACGACGTTCATGGCACCCTCTTCTTGTCCTGGGCCGACGGCCATTTCAACGGCACCAAGGACATTTCTCCTAgactctcctcctcctccactcACCATTATCCTCCGCCGCCAGACAGAGCAACCTTCATCAACGGCATCCACTCCCTCATCAACGACGACGAAACCACCAACATTTGCAACGACCTCCACGACACCGAGTGGTTCTATGTCATGTCCTTGACTCGCACTTTCTCcgtctcctcctcctcttcctcttcccttCCTGGGAAGGCCTTCACTTCCGGTTCATTACTCTGGCTAAACAGCGAGCGTGAGCTTCAATTCTGCAATTGCGAGAGAGCCAAAGAGGCCTACCTTCACGGAATCGAGACTCTCGTTTGCATCCCCACCAATCACGGAGTTCTCGAATTGGGCTCCTCCGATCTCATTCCAGAAAACTGGGCCCTCGCACAGCAAGTCAAATCTCTGCTCGGCTCGGATCTCAATCCCAATCCCATCCCCAAGCAACAACCGCACAACAACCCCATTCAATTCTTCGACAACCACAACATCTCCTTCGCCGACATCGGCATTATCGCCGGCGTccaagaagaagagcaagaagAAGACGACAAGAGCCAGAGTCGGACCCGGGCTCGGATTCGGACCGATAAGATGGAACAGAGGAGCAAGGGGAAATTCGGGTACGCGGATTCGGACCATTCCGATTCGGATTGCAATAACCCTTCGATCGAGAAGCGAACCCCTAAGAAGAGAGGGAGGAAGCCAGGGCTGGGGCGCGAGACGCCGTTGAACCACGTGGAGGCAGAGCGGCAACGGCGCGAGAAGCTGAACCACCGGTTCTACGCGCTACGCGCGGTGGTGCCGAACGTGTCGCGAATGGACAAGGCGTCGCTGTTATCGGACGCCGTGGATTACATCAACGGCCTGAAATCGAAGATCGAGGAGTTGGAATCGCAGATTCAGAAGGACAAAGAAacgaacaacaacaacaacaacagtaGCAGCAGCAATAAGAGGGTAAAATTGGAAATGGCGGATAATACGACGGACAACCAGAGCACGACGACGACGTCGACGGAGGATCAGCAAACGACGTCGTCGTCGAGTGGGTCGGGGATAGAGGTGGAGGTGAGGGTGATGGGACCGGAGGCGATGGTTCGGGTCCAATCGGAGAAGACGAACCACCCAGGGGCGAGGCTGATGTGTGCGTTGCGAGAGTTGGAGCTAGGGGTGCACCACGCGAGCATGTCGTGCGTGAACGAGCTGATGCTACAGGATGTGGTGGTCAAGATTCCTGAACAATTGAGGTGTGAAGAGAAATTGAAGTCTGCCATTCTCGCAAGATTAATGGGCAAGAAAAAACAAGACGCTAAGGAGCTCAATGATTTGTTTAAACAACTGAACTATTTGCAAGAAAAATCAAAGccaatttaa 1590 0.4943 MDDLIISPSSSSSLVSLPHETQPSLHQKLQFLLHSQPEWWVYAIFWQISNDDVHGTLFLSWADGHFNGTKDISPRLSSSSTHHYPPPPDRATFINGIHSLINDDETTNICNDLHDTEWFYVMSLTRTFSVSSSSSSSLPGKAFTSGSLLWLNSERELQFCNCERAKEAYLHGIETLVCIPTNHGVLELGSSDLIPENWALAQQVKSLLGSDLNPNPIPKQQPHNNPIQFFDNHNISFADIGIIAGVQEEEQEEDDKSQSRTRARIRTDKMEQRSKGKFGYADSDHSDSDCNNPSIEKRTPKKRGRKPGLGRETPLNHVEAERQRREKLNHRFYALRAVVPNVSRMDKASLLSDAVDYINGLKSKIEELESQIQKDKETNNNNNNSSSSNKRVKLEMADNTTDNQSTTTTSTEDQQTTSSSSGSGIEVEVRVMGPEAMVRVQSEKTNHPGARLMCALRELELGVHHASMSCVNELMLQDVVVKIPEQLRCEEKLKSAILARLMGKKKQDAKELNDLFKQLNYLQEKSKPI 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g1204 529 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 312 361 IPR011598 GO:0046983
Sto6g1204 529 MobiDBLite consensus disorder prediction 247 323 - -
Sto6g1204 529 MobiDBLite consensus disorder prediction 253 298 - -
Sto6g1204 529 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 25 207 IPR025610 -
Sto6g1204 529 MobiDBLite consensus disorder prediction 375 425 - -
Sto6g1204 529 Pfam Helix-loop-helix DNA-binding domain 316 361 IPR011598 GO:0046983
Sto6g1204 529 MobiDBLite consensus disorder prediction 372 425 - -
Sto6g1204 529 Coils Coil 351 385 - -
Sto6g1204 529 SMART finulus 318 367 IPR011598 GO:0046983
Sto6g1204 529 PANTHER TRANSCRIPTION FACTOR BHLH14 1 501 - -
Sto6g1204 529 Gene3D - 310 379 IPR036638 GO:0046983
Sto6g1204 529 PANTHER MYC 1 501 IPR045084 GO:0003700|GO:0006355
Sto6g1204 529 MobiDBLite consensus disorder prediction 306 323 - -
Sto6g1204 529 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 304 373 IPR036638 GO:0046983
Sto6g1204 529 CDD bHLH_AtAIB_like 310 374 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto6g1204 Sto-Chr6 11536793 11540375 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto6g1204 22 501 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G46760 35.017 3.40e-91 289
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Sto6g1204 bHLH-MYC_N 5.9e-48 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto6g1204 - K13422 qsu:111993276 496.123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto6g1204 6 11536793 11540375 Sto6g1204 6 11536793 11540375 ECH