Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g1201 ATGTTATCTCATTCTGAATATTCCAATTCTGCAGAAAGCACAATAAGTTCATCATCATGTAGCGAGAAGCCGACGGCGAGGAAGACGAAAAACAAGAGAAGGTTCAGCGACGAGCAGATCAAGTCATTGGAGTCCACGTTCGAGACGGAGTGGCGGCTCGAGCCTCGGAAGAAGCTCCAGGTGGCTCGAGACTTAGGGTTGCAGCCACGCCAGttgCAGGAGCTGAATGAGCAAATGAATGGAGAAATTGGTGTCAAGTGTGAAGCAGAGGCGAAGCAGAGTCCATCGGATGAACACCCTATTTCTGCACTTATGAACTTGGTTGATCATCAGTATAATACTGATGGGTGTTTGTCATCACCAGAAGATTGGGGTAAGCTTGAAAGTGATGATGATTGTGCTTATCAATGGTGGGATTTCTGGTCCTGA 429 0.4685 MLSHSEYSNSAESTISSSSCSEKPTARKTKNKRRFSDEQIKSLESTFETEWRLEPRKKLQVARDLGLQPRQLQELNEQMNGEIGVKCEAEAKQSPSDEHPISALMNLVDHQYNTDGCLSSPEDWGKLESDDDCAYQWWDFWS 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g1201 142 Gene3D - 12 100 - -
Sto6g1201 142 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 4 72 IPR045224 GO:0003700
Sto6g1201 142 SUPERFAMILY Homeodomain-like 6 73 IPR009057 -
Sto6g1201 142 CDD homeodomain 30 73 IPR001356 GO:0003677
Sto6g1201 142 ProSiteProfiles 'Homeobox' domain profile. 26 73 IPR001356 GO:0003677
Sto6g1201 142 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-7 4 72 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto6g1201 Sto-Chr6 11462751 11463368 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto6g1201 23 72 Homeobox Transcription Factor Family AT2G46680 68.000 1.70e-16 71.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Sto6g1201 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto6g1201 K09338 - csin:114317616 81.6481