Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g1190 ATGAATGAGAATGGGGTGTGGGCTAGGGTGGGTAAGCACAGACTTAACTTGTCTTCTTGTGCATCCTCTACTATTGGGAAATGTCTTTCTAGAGGGAAGGCCATTGTGGAAGGGGGGAAGGTGAGGGTTGTTCACTCAGGTCTCAATACTAGCTTTTGGTGGGATAATTGGACCAATCTTGGCCCTATTTGGTTCTTAATTCAAGGACCTTTCAAGCGGGAGGAGTGTAATATTTCTGTGGCTGAGGCTGCAAATTTTCAGGGGGGGTGGTATAACCTTGATATTTCTTTTGTGCTTCCTGATTTTGTTATGAACTGTATTAAAGATGTTCCTGTGAATCCTCACACTAATCAATCTGATTGTCTTGCTTGGAAAGGGCGGAAAGATGGAAATTTTGATCTTAAATCTGCTTATACTCTTGCTTTAAGAGTTGGGGTTGAGACCCCTCATCATTTGTTCTATTTTTGCAACCCTACTAGATCTGTGTGGCAGGTTGTAGTGTCTAAATTTAAGGCTTTTGATTATTCTGATTTTCAATCTTGGATTAAAGAGAATGCTTCTTCCAAGCTGCTTTCTGCGGGTTTTAAGATTCCCCATGGCATGTTATTTGCTTATATCATTTGGCACATTTGGATTGCTAGAAATAATAAATTGTTTAATGATGATAAATTTTCTCCAAGGTCTATTGTTCATTTGGCTCTAGCTAGAGCAGCCGAGTTTACCTTCTTGACACCAAATGCAATAGCATTCAAGCAGAATTATGGGTTGTTTATTGGTCTTAAAAGGGCTAAAGAATTGGGTATTCAATTACTGGAAGTGGAATGTGATTGTGTGAGTGTGGTGGACCTTATATCATGCTCCAATTTGGTTGATGCTCATCCTCTTGCTCCCTTAATCTATATGTGCAGGTGCCGTCTTCGAGACGACTCTTCCTTCATCGAGATGATTCTGTGCAGCCCAATACGTCTCATTCTTGTGGTACTATTGATTTTTCTTGTGTTATTCGTCGTTCGGGTGATTTTGTTCAAAACTGGATTCATATATACTGTGAAGAGACTATGGAGAATCACTGAAGACTACTTTCATGTTCACCAGTTCTTCAAAGTTCCAGAGCTCAACGAAAGCATGCGAGAGAATCAGCTTTACAAGAAAGTCTCTCTGTATCTGCATTCTCTGCCTTCCATTGAGGACTCTGACTTCACCAACCTCGTTACCTCCGCAGGCAAGAACCAGAACGACATCGTTCTTTGCCTCGACCCTAAACAAACCATCATCGACCATTTTCTCGGAGCCAGAGTATTCTGGTTTCAGGAAACAGCACAAGGAAAATCAGAATCGGAAAACAGAACGTTCATACTCAAAATCAGGAAAGCAGATAAGCGAAGAATTCTCCGACCTTATTTCCAGCACATCCACGCCGTCGCCGACGAAATCGAGCAACAAGGAAAACGCGATTTGAAGCTATTCATGAACTCCGGCGCCGGCAAAGGGCGGTGGAGATCTGTTCCGTTCACGCATCCTTCAACGCTAGATACTCTAGCCATGGAATCGGATCTGAAGAACAAGATAAAATCCGACCTCGAATCGTTCCTCAAAGCCAAACAGTACTACAACCGGTTAGGTCGAGTATGGAAACGGAGCTTCCTTTTGTACGGTCCCTCCGGCACCGGTAAATCAAGCTTCGTCGCTGCCATGGCCAATTTCCTCGGCTACGACGTCTACGACATCGAGCTATACAATCTCCACGGAGATTCCGATATGAGGCTGCTTCTGCTCGAAACGACGCCGAAATCTATCGTCGTCATCGAAGACCTCGATCGGTTCCTGATGGAGAAGAAACCAACGGGCGTGAGCTTCTCGGGGATTCTCAACTTCATGGATGGCATTTTGAACTCGTGCTGCGCAGAGGAGAGAATCATGGTGTTCACGATGACCAGCAAGGACCGAATCGACCCGAACCTCCTCCGTCCGGGTCGGGTCGACGTCCATATCCATTTTCCTCTCTGCGATTTCTCGTCGTTCAAGACGCTCGCGAGTAGCTATTTGGGGGTGAAGGACCACAAGCTATTCTCACAGGTGGAGGAGATTTTCCAAAGCGGCGCGAGTTTGAGCCCCGCCGAGATCGGCGAGTTGATGATCGCGAATCGGAACTCGCCGAGTCGGGCCATTAAATCGGTGATCAACGCGCTCCAAACGGACGGCGATGGGAGGGGGAGCGGGATGATCGGACGGCGGAGCGACAACGACGAGGAATTGGATGGACGGGGTGATGGTGGGTCCCTTTGCAGGGAGGGTCCCCATACAGTTAAGGACATACGAAAGCTGTACGGTTTGTTCAGATTGAGGAGCGATTCGAAATCTCAGTCGTTCGATGCAGCAGTGGTGGATCCGAAGGCAGGGAGATGA 2406 0.4651 MNENGVWARVGKHRLNLSSCASSTIGKCLSRGKAIVEGGKVRVVHSGLNTSFWWDNWTNLGPIWFLIQGPFKREECNISVAEAANFQGGWYNLDISFVLPDFVMNCIKDVPVNPHTNQSDCLAWKGRKDGNFDLKSAYTLALRVGVETPHHLFYFCNPTRSVWQVVVSKFKAFDYSDFQSWIKENASSKLLSAGFKIPHGMLFAYIIWHIWIARNNKLFNDDKFSPRSIVHLALARAAEFTFLTPNAIAFKQNYGLFIGLKRAKELGIQLLEVECDCVSVVDLISCSNLVDAHPLAPLIYMCRCRLRDDSSFIEMILCSPIRLILVVLLIFLVLFVVRVILFKTGFIYTVKRLWRITEDYFHVHQFFKVPELNESMRENQLYKKVSLYLHSLPSIEDSDFTNLVTSAGKNQNDIVLCLDPKQTIIDHFLGARVFWFQETAQGKSESENRTFILKIRKADKRRILRPYFQHIHAVADEIEQQGKRDLKLFMNSGAGKGRWRSVPFTHPSTLDTLAMESDLKNKIKSDLESFLKAKQYYNRLGRVWKRSFLLYGPSGTGKSSFVAAMANFLGYDVYDIELYNLHGDSDMRLLLLETTPKSIVVIEDLDRFLMEKKPTGVSFSGILNFMDGILNSCCAEERIMVFTMTSKDRIDPNLLRPGRVDVHIHFPLCDFSSFKTLASSYLGVKDHKLFSQVEEIFQSGASLSPAEIGELMIANRNSPSRAIKSVINALQTDGDGRGSGMIGRRSDNDEELDGRGDGGSLCREGPHTVKDIRKLYGLFRLRSDSKSQSFDAAVVDPKAGR 801
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g1190 801 Pfam Reverse transcriptase-like 255 303 IPR002156 GO:0003676|GO:0004523
Sto6g1190 801 CDD AAA 545 668 - -
Sto6g1190 801 Pfam Domain associated at C-terminal with AAA 351 435 IPR025753 -
Sto6g1190 801 Gene3D - 500 665 IPR027417 -
Sto6g1190 801 PANTHER BCS1 AAA-TYPE ATPASE 324 755 - -
Sto6g1190 801 PANTHER BNAC04G00800D PROTEIN 324 755 - -
Sto6g1190 801 SMART AAA_5 544 670 IPR003593 -
Sto6g1190 801 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 469 729 IPR027417 -
Sto6g1190 801 MobiDBLite consensus disorder prediction 740 764 - -
Sto6g1190 801 MobiDBLite consensus disorder prediction 734 764 - -
Sto6g1190 801 Gene3D - 666 730 - -
Sto6g1190 801 Pfam ATPase family associated with various cellular activities (AAA) 549 668 IPR003959 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto6g1190 Sto-Chr6 11374081 11379210 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto6g1190 540 666 Calmodulin-binding Proteins AT3G56690 30.282 4.03e-08 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto6g1190 - K08900 gmx:100805212 651.358
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto6g1190 6 11374081 11379210 Sto6g1190 6 11374081 11379210 ECH
Sto6g1190 6 11374081 11379210 Sto1g0858 1 9229144 9230580 ECH