Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g1187 CTGTGTCACAAGATGATGGTAGTTGATGTATTGTCTGGTGCCTCTTCTGGTGCTAGCTCAGAATTTATTTCTCAACTAATAGATGCTATTTTTGAGATTGTAAACGCAGCTAGCGATGTCCTTGTGAAGAAGGAGGCTTTTAAGGAACTTGCAGGTTACTTGGAAAGAATTGTGCCCATCTTAAAAGAACTGAGGAACAAAAAGTTCAGCAATATTGAGACCTTCAATCACATCGTAGATATTTTGAATCGTGAAATAAGTTATGCAAATAAACTGGTACAAGAATGCAGCAAGAGGAACAAGGTCTATCTCCTGTTGAACTGCAGGTCAATTGTTAAGCGTTTAAAGAACAGCACAAGTGAGATCAGCCGGGCTCTCGGTCTTATTCCTCTGGCTACATCAGAACTTTCTTCTGGGGTAGTCGAAGAGATTGAAAATCTCTGTGACAATATGCAGAAAGCTGAGTTTAAGGCAGCCATATCAGAAGAGGAGATTTTAGAGAAAATCGAGTTTGGGATACAAGAAAAGAATGGTGACCGCTCTTATGCCAATAATTTACTTATGCTTATTGCTGATGCTGTTGGAATAACAAATGAGAAATCTACAATGAAGAAGGAACTAGAAGAATTCAAGATGGAAATTGAAAATGCCCGTCTTAGGAAGGACTTGGCTGAAGCTATACAAATGGATCAGATCATAGCTTTGCTTGAAAGAGCTGATGCAGCCTCATCCCCAAAGGAAAAGGAACTGAAGTACTTTGCGAAACGTAAATCTCTGGGAACTCAACCCTTAGAGCCTCTTAAGTCATTTTATTGCCCAATCACCCGGGATGTTATGCTGGATCCTGTCGAAACTTCATCAGGGCAGACATTTGAGAGAAGTGCAATAGAAAAGTGGTTTGCAGAAGGAAACAACTTGTGTCCTCTGACCATGACTCCTTTAGATACATCGGTTTTGCGACCTAACAAAACCTTGAAGCAATCAATAGAAGAATGGAAAGATAGAAATACTATGATTACAATAGCttcaatgaaagaaaaaatccAGTCTTTAGAGGATGATGAAGTATTGAATTGTCTGGGAATTTTACAGGATTTGTGTAACCAAAAAGATCAGCACAAAGAATGGATGGTATTGGAGAATTACATACCAATTCTTATCAAGGTTCTTGGTTCCAAAAACCGTGATGTGAAGAATTATGCTCTTACCATCCTTTGCACGCTGGCCAAGGATAGTGACAATGCTAAGGAAAGAATTGCAAATGTTGATAATGCAATTGAGTCCATTGTACGTTCTCTTGGGCGCCGTGTGGGAGAGAGGAAGTTGGCAGTGGCATTACTGTTGGAATTATCCAAATATGATAGGTTACTAGAATACATTGGAAAGGCTCAAGGTTGCATACTACTATTAGTGACGATGTCTAGCGGTGATGACAATCAAGCTGCCAGAGATGCTACAGAACTGCTGGAGAATCTTTCTTATTCTGATCAGTATGTTTTGCAGATGGCAAAGGCAAACTATTTCAAGCATTTGTTGCAGCGCCTCTCCACAGGGCCAGATGATGTTAAAATGATTATGGCAACAACTCTAGCAGAAATGGAGTTAACTGACCACAATAAAGAGTCCTTGTTTCAAGGTGGTGTGCTGGATCCTCTTCTTCACTTGGTATCATATGGTGATACTCAGGTGAAAACAACGGCTATCAAAGCTCTTCGAAACCTATCCAGTTTAAAGAAAAATGGACTGGAAATGATTCGACAAGGAGCCGTACGCCCATTACTTGATCTTCTTTTTCGTCACAGCTTACCACCCTCAAGTCTGCGGGAACATGTTGCTGCCATAACCTTGCAACTTGCTGAATCAACCATTGCTCAAGATACCCAGACACCAGTTTCATTATTTGAATCTGATGATGATGTTTTTAGCCTCTTCTCTCTAATTAGATTCACGGTGCTTGATGTGCAACGAAACATTATCCAGACTTTTTATGCCTTGTCTCAGTCCCCGTCGGCTTCATATATCAAGACCAAGCTAATAGCGTGCTCGGCTGTTCAAGTTTTGATTCAGATGTGTGAGAATGAAAACATAAACCTAAGCCTGCGAGCAAGTGCTGTAAAACTGTTGTCTTGCTTGGTAGAAAGTTGTGATGAAGCTAGCATCTTGGAGAATATAAACCAGAAGAGCATTGAGAATTTGCTCCGGATCCTTAGATCCTCTTCCGATGAAGAGGAAGTTGCTTCTGCTATGGGCATATTATGCCATCTTCCAGAAATTCAGGAGATCACTCAATGGCTTCTAGATGGCAGTGTGCTTCCATTGATTTATAAGTATATCCAGGAAGGGAAGGATAGAGACCTCCTAAAAAAAAACTTGGTAGAGAATTCTGTAGGCGCCCTCTGTCGTTTCACAGTTCCAACGAACACAGAATGGCAAAAAAGTGCAGCAGAAACTGGGATAATAACTGTTTTAGTACAGTTGCTCGAATGTGGAACCACATTGACTAAACAGCGTGCCGCATTGTGTCTTACTCGATTTTCCAAGAGTTCCCTTAGGCTGAGCAAGCCAATTTCCAAGCGCAAGGGACTATGGTGTTTCTCGGCTCCGGAAGAAATAGGCTGCTTGGTTCACGGAGGAATCTGTGCAGTCAAGTCATCATTTTGCCTTGTGGAGGCTGATGCAGTGGGACCTCTAGCGAGGACTCTAGGGGAACCCGATCCAGGAGTGTGTGAGGCTTCTTTAGATGCACTCTTGACTTTGATTGAAGGTGAGAGATTGCAGAGTGGTTGTAAAGTGCTTGAACCAGCAAAAGCCATACCTGCAATGATAAGATTTCTTGGCTCTCCTTCTCCTGGACTGCAGGAAAAGTCTCTTCAAGCTTTGGAAAGGATTTTTCGGTTAATGGAGTTCAAACAGAAGTATGGAGCTTCTGCTCAAATACCTCTAGTTGACTTAACTCAAAGGGGTAATGGTAGCGTGAGATCGATGGCGGCTAGAATATTGGCACATCTGAATGTGCTTCATGATCAGTCTTCTTATTTCTGA 3042 0.4149 LCHKMMVVDVLSGASSGASSEFISQLIDAIFEIVNAASDVLVKKEAFKELAGYLERIVPILKELRNKKFSNIETFNHIVDILNREISYANKLVQECSKRNKVYLLLNCRSIVKRLKNSTSEISRALGLIPLATSELSSGVVEEIENLCDNMQKAEFKAAISEEEILEKIEFGIQEKNGDRSYANNLLMLIADAVGITNEKSTMKKELEEFKMEIENARLRKDLAEAIQMDQIIALLERADAASSPKEKELKYFAKRKSLGTQPLEPLKSFYCPITRDVMLDPVETSSGQTFERSAIEKWFAEGNNLCPLTMTPLDTSVLRPNKTLKQSIEEWKDRNTMITIASMKEKIQSLEDDEVLNCLGILQDLCNQKDQHKEWMVLENYIPILIKVLGSKNRDVKNYALTILCTLAKDSDNAKERIANVDNAIESIVRSLGRRVGERKLAVALLLELSKYDRLLEYIGKAQGCILLLVTMSSGDDNQAARDATELLENLSYSDQYVLQMAKANYFKHLLQRLSTGPDDVKMIMATTLAEMELTDHNKESLFQGGVLDPLLHLVSYGDTQVKTTAIKALRNLSSLKKNGLEMIRQGAVRPLLDLLFRHSLPPSSLREHVAAITLQLAESTIAQDTQTPVSLFESDDDVFSLFSLIRFTVLDVQRNIIQTFYALSQSPSASYIKTKLIACSAVQVLIQMCENENINLSLRASAVKLLSCLVESCDEASILENINQKSIENLLRILRSSSDEEEVASAMGILCHLPEIQEITQWLLDGSVLPLIYKYIQEGKDRDLLKKNLVENSVGALCRFTVPTNTEWQKSAAETGIITVLVQLLECGTTLTKQRAALCLTRFSKSSLRLSKPISKRKGLWCFSAPEEIGCLVHGGICAVKSSFCLVEADAVGPLARTLGEPDPGVCEASLDALLTLIEGERLQSGCKVLEPAKAIPAMIRFLGSPSPGLQEKSLQALERIFRLMEFKQKYGASAQIPLVDLTQRGNGSVRSMAARILAHLNVLHDQSSYF 1013
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g1187 1013 Gene3D - 337 436 IPR011989 -
Sto6g1187 1013 ProSiteProfiles U-box domain profile. 265 339 IPR003613 GO:0004842|GO:0016567
Sto6g1187 1013 SUPERFAMILY RING/U-box 258 338 - -
Sto6g1187 1013 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 268 336 IPR013083 -
Sto6g1187 1013 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 20 1013 - -
Sto6g1187 1013 Pfam Armadillo/beta-catenin-like repeat 537 576 IPR000225 GO:0005515
Sto6g1187 1013 CDD RING-Ubox_PUB 270 311 IPR045210 -
Sto6g1187 1013 Gene3D - 871 1011 IPR011989 -
Sto6g1187 1013 SUPERFAMILY ARM repeat 341 1006 IPR016024 -
Sto6g1187 1013 Pfam U-box domain 270 336 IPR003613 GO:0004842|GO:0016567
Sto6g1187 1013 Gene3D - 18 133 IPR036537 GO:0007166
Sto6g1187 1013 Coils Coil 144 164 - -
Sto6g1187 1013 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 20 1013 - -
Sto6g1187 1013 SMART Ubox_2 269 332 IPR003613 GO:0004842|GO:0016567
Sto6g1187 1013 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 547 589 IPR000225 GO:0005515
Sto6g1187 1013 SMART arm_5 925 965 IPR000225 GO:0005515
Sto6g1187 1013 SMART arm_5 370 410 IPR000225 GO:0005515
Sto6g1187 1013 SMART arm_5 807 847 IPR000225 GO:0005515
Sto6g1187 1013 SMART arm_5 536 576 IPR000225 GO:0005515
Sto6g1187 1013 SMART arm_5 881 921 IPR000225 GO:0005515
Sto6g1187 1013 SMART arm_5 452 494 IPR000225 GO:0005515
Sto6g1187 1013 Coils Coil 200 227 - -
Sto6g1187 1013 Gene3D - 437 849 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto6g1187 Sto-Chr6 11350160 11355796 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto6g1187 268 1013 U-box Gene Family AT1G76390 27.916 4.16e-56 207
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto6g1187 - - gmx:100799969 1422.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto6g1187 6 11350160 11355796 Sto6g1187 6 11350160 11355796 ECH