Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g1185 ATGAGGCCGGTTTTTGTTGGGAACTTTGAGTATGATACCCGTCAATCAGAGCTTGAACGCCTGTTCGCCAAGTATGGGAGGATTGAACGCGTGGACATGAAATCGGGTTTTGCTTTTGTCTATTATGAGGACGAGCGTGATGCTGAAGATGCAATTCGTGCGCTTGATAATTTTCCATTTGGCTATGATAAGCGAAGGCTGTCAGTAGAGTGGGCTAGAGGCGAGCGTGGTCGTCATCGTGATGGTTCCAAAGCAAACACTAGGCCCACGAAAACCTTATTTGTGATCAACTTTGACCCAATTCGTACCAGAGTTCGTGATATAGAAAGACATTTTGAACCTTATGGGAAGGTTCTTCATGTTCGGATACGTCGGAATTTTGCGTTTGTGCAGTTTGAAACACAAGAAGATGCTACTAAAGCTCTTGAGTGTACTCATATGAGCAAGATTCTGGATAGGGTGGTGTCTGTGGAGTATGCTCTCAGGGATGATGATGAGAGGGGCGGCGGCGACAGATATTATGACAGTCCTAGGAGAGGAGGGGGTTATGGAAGATCACCCAGTCCAGTTGCTCGCAGGCGACCAAGTCCTGATTATGGTCGACCTCGTAGCCCCGTGTATGATAGGTACAATGGACCAGCCAGGCCAAGGAGTCCTGATTATGGAAGGCACAGAAGTCCAGAATTTGGTAGATATCGCAGCCGTTCACCAATCCGAAGGTCAAGGACTTGA 732 0.4768 MRPVFVGNFEYDTRQSELERLFAKYGRIERVDMKSGFAFVYYEDERDAEDAIRALDNFPFGYDKRRLSVEWARGERGRHRDGSKANTRPTKTLFVINFDPIRTRVRDIERHFEPYGKVLHVRIRRNFAFVQFETQEDATKALECTHMSKILDRVVSVEYALRDDDERGGGDRYYDSPRRGGGYGRSPSPVARRRPSPDYGRPRSPVYDRYNGPARPRSPDYGRHRSPEFGRYRSRSPIRRSRT 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g1185 243 SMART rrm1_1 92 158 IPR000504 GO:0003723
Sto6g1185 243 SMART rrm1_1 3 70 IPR000504 GO:0003723
Sto6g1185 243 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 91 162 IPR000504 GO:0003723
Sto6g1185 243 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 4 214 - -
Sto6g1185 243 CDD RRM2_AtRSp31_like 92 161 - -
Sto6g1185 243 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 93 155 IPR000504 GO:0003723
Sto6g1185 243 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4 60 IPR000504 GO:0003723
Sto6g1185 243 MobiDBLite consensus disorder prediction 166 243 - -
Sto6g1185 243 Gene3D - 83 203 IPR012677 -
Sto6g1185 243 SUPERFAMILY RNA-binding domain, RBD 4 80 IPR035979 GO:0003676
Sto6g1185 243 Gene3D - 1 82 IPR012677 -
Sto6g1185 243 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 2 74 IPR000504 GO:0003723
Sto6g1185 243 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR RS31-RELATED 4 214 IPR029537 GO:0000398|GO:0005681
Sto6g1185 243 SUPERFAMILY RNA-binding domain, RBD 86 187 IPR035979 GO:0003676
Sto6g1185 243 MobiDBLite consensus disorder prediction 218 235 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto6g1185 Sto-Chr6 11332098 11334697 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto6g1185 4 207 Eukaryotic Initiation Factors Gene Family AT4G34110 27.706 1.11e-09 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto6g1185 K12893 - gmx:100801043 377.096
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto6g1185 6 11332098 11334697 Sto6g1185 6 11332098 11334697 ECH