Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g1171 ATGGCACATCTGGGGTGTAATTCCAGGGGCCCGACCAGTTCTCAACCCGAAACAGGTTTGGAAGATGACGATTTGTACACACAGTTATGGAAGTTGTGTGCAGGGCCTTTGGTGGATGTTCCTCGTGATGGAGAGAGAGTTTTCTACTTCCCACAGGGTCACATGGAACAGTTGCAAGCATCAACGAATCAGGAATTGAACCAACGAATTCCCCATTTCGATATTTCTTCCAAGATTTTATGCCGTGTTATGCACATTCAGTTATTGGCTGAACAAGACACCGACGAAGTTTATGCTCGTATTACTTTACTTCCAGAATTAGATCAAACTGAGCCTGAAAGTCCTGATCCATGTTTACCGGAGACTAGGacacaaaattttcattcattttgcAAGATATTAACGGCCTCTGATACTAGCACACATGGAGGATTTTCGGTTCTGCGGAAGCATGCTAATGAGTGCCTACCTCAGTTGGACATGTCCCAAGCAACCCCGACTCAGGAGTTGGCAGCAAAGGATCTTCATGGTTTTGAGTGGAAATTTAAGCATATTTTCAGAGGTCAACCAAGGAGGCACTTGCTTACAACTGGATGGAGTACATTTGTTACTTCCAAAAGATTGGTAGCTGGAGATGCTTTTGTGTTTTTGAGGGGGGAGGATGGGGAACTGAGAGTTGGTGTTCGGCGCCTTGCCCGGCAACAGAGCCCAATACCTTCATCTGTGATATCTAGCCAGAGCATGCATCTAGGAGTTCTTGCCACTGCTTCCCATGCAGTAGCGACGCGAACCATGTTTGTGGTTTATTACAAACCAAGgactagACAGTATATAATTGGTTTGAACAAATATTTGGAGGCAATTAACAACAAGTTCTCTGTTGGTATGCGTTTCAAGATGAGATTCGAGGGAGATGACTCACCTGAGAGAAGGTTTTCTGGTACTATCATTGGTGTTGGTGATGTATCTTTGGATTGGCCCGACTCTAAGTGGCGGTCATTGAAGGTACAATGGGATGAACCGGCAACAATTCTGAGGCCAGAGAGGGTTTCTCCTTGGGAGATAGAACCTTTTGTAGCCTCTACAGCTCTAAATCTTGTTCAACCATCTGTAAAGAACAAAAGGTCCCGGCCTGCTGATGTTCCTTCTTCTGAAATGGCTTCCAATTCTGCTGCATTAGCTTTCTGGTATCATGGGTCGTCCCAGTCCCATGAGCTTGCTCAATTAGGTGGTGCAGCTGAATTTCAAAGCAACGAGAGCCAGGTTTTATGGAATGTCAGGCAGAAGGATATGAATGGTAATCCTTTGAATAACAGTAACTCAAGCAGCACCAGGGTACGGATGGAAGGAAATTGGCCTTCACATATGAATGTCCCTTCTAATTGTTTTCCTGATCCCCAGAGCAACAAAGCTGTTGTGGAACAAACTTCTGTATCGGGTTATCCTCCTGTTTCATCTCAGCAGAACAATAGGCCGGTATATGATCAAGTTGAGAATGAAAAGAAATCTGAGAATCCTGTGGGTTACCGGCTATTTGGAGTTACTTTGACCAACAACTCTGGCAATGTTGCTTCTCTAGAGAAACAGCTAGGAGGCTGCACTACGATTATTCCTAGTGGTGGTGCCAAAGAATCTGTTCCTATTGCTGCATGTGAAACTGAGAAGGGTCAGAATTCCGATCCTTCACTGTCCAAGGAGCAGAAGCAAGAAACCTCTAATGTATCACCAAACGAGAGGCAGAGCAAGCAGGTGTCTCTACCATCCACGAGGACTCGGACAAAGGTGCAAATGCAAGGTGTGGCTGTTGGTCGAGCAGTCGATTTGACCACACTGAATGGTTACGATGATCTGATCGAAGAGCTTGAGAAATTGTTCGACATCAAAGGAGAGCTTAGTGCACAGAACAAATGGGCAGTTACGTTTACTGATGATGAGAATGACATGATGCTTGTGGGTGATGATCCATGGCCGGAGTTCTGTAATATGGTCAAGAGGATTATCATCTATTCAAGGGAGGAAGTGAAGAAGCTGAATGCTACATGCAAGGTTCCTGCATCCTCATCAGAAGGTGAAGAGACAATGATCAGCATGAACTCACAGAATAAGGATGAAACTTAA 2118 0.4443 MAHLGCNSRGPTSSQPETGLEDDDLYTQLWKLCAGPLVDVPRDGERVFYFPQGHMEQLQASTNQELNQRIPHFDISSKILCRVMHIQLLAEQDTDEVYARITLLPELDQTEPESPDPCLPETRTQNFHSFCKILTASDTSTHGGFSVLRKHANECLPQLDMSQATPTQELAAKDLHGFEWKFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDAFVFLRGEDGELRVGVRRLARQQSPIPSSVISSQSMHLGVLATASHAVATRTMFVVYYKPRTRQYIIGLNKYLEAINNKFSVGMRFKMRFEGDDSPERRFSGTIIGVGDVSLDWPDSKWRSLKVQWDEPATILRPERVSPWEIEPFVASTALNLVQPSVKNKRSRPADVPSSEMASNSAALAFWYHGSSQSHELAQLGGAAEFQSNESQVLWNVRQKDMNGNPLNNSNSSSTRVRMEGNWPSHMNVPSNCFPDPQSNKAVVEQTSVSGYPPVSSQQNNRPVYDQVENEKKSENPVGYRLFGVTLTNNSGNVASLEKQLGGCTTIIPSGGAKESVPIAACETEKGQNSDPSLSKEQKQETSNVSPNERQSKQVSLPSTRTRTKVQMQGVAVGRAVDLTTLNGYDDLIEELEKLFDIKGELSAQNKWAVTFTDDENDMMLVGDDPWPEFCNMVKRIIIYSREEVKKLNATCKVPASSSEGEETMISMNSQNKDET 705
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g1171 705 Gene3D - 127 231 IPR015300 -
Sto6g1171 705 PANTHER AUXIN RESPONSE FACTOR 11 9 689 - -
Sto6g1171 705 MobiDBLite consensus disorder prediction 1 20 - -
Sto6g1171 705 Gene3D - 291 363 - -
Sto6g1171 705 SUPERFAMILY DNA-binding pseudobarrel domain 119 259 IPR015300 -
Sto6g1171 705 Gene3D - 586 678 - -
Sto6g1171 705 Pfam Auxin response factor 256 335 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Sto6g1171 705 SMART B3_2 130 232 IPR003340 GO:0003677
Sto6g1171 705 MobiDBLite consensus disorder prediction 555 592 - -
Sto6g1171 705 MobiDBLite consensus disorder prediction 552 592 - -
Sto6g1171 705 Pfam AUX/IAA family 634 673 IPR033389 -
Sto6g1171 705 Pfam AUX/IAA family 569 626 IPR033389 -
Sto6g1171 705 ProSiteProfiles PB1 domain profile. 590 673 IPR000270 GO:0005515
Sto6g1171 705 MobiDBLite consensus disorder prediction 685 705 - -
Sto6g1171 705 CDD B3_DNA 128 230 IPR003340 GO:0003677
Sto6g1171 705 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 9 689 IPR044835 GO:0003677|GO:0006355|GO:0009725
Sto6g1171 705 Pfam B3 DNA binding domain 130 230 IPR003340 GO:0003677
Sto6g1171 705 ProSiteProfiles B3 DNA-binding domain profile. 130 232 IPR003340 GO:0003677
Sto6g1171 705 SUPERFAMILY CAD & PB1 domains 587 666 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto6g1171 Sto-Chr6 11215583 11219711 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto6g1171 25 677 B3 DNA Binding Superfamily AT4G23980 57.704 0.0 687
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Sto6g1171 B3 3e-21 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto6g1171 K14486 - gmx:100790981 987.252
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto6g1171 6 11215583 11219711 Sto6g1171 6 11215583 11219711 ECH