Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g1163 ATGCGAAACGTGTTTGTTTTGGGGGAGAGCAATGATGGGAGTGCGCCTAAAATGCGTGACCCTGCTGAGCTGGATGTGTGCCTGATGAATAATGAGGCGTCGCTTGATTATCGTCACGCGCCAGACGGAGAGCGCGTGCGCTTAGAAGTTAGATTGGTGGAGAAAGAgcgcaagaagaagaagaagccacagATTGAGGTAGGTCTAGGAGGCATGTTATGGAACGAAGACGAACGAGCCATGGTGTCCGCAGTTCTGGGCACACAAGCTTTCGATTACTTACTCAACAACTCTGTTTCGAATGAGAATCTCTTAATGGCGGTCGGGAGCGACGAGAATCTCCAGAACAAGCTCTCGGATCTCGTGGACCGTCCGAACGTATCGAATTTCAGCTGGAACTACGCGATTTTCTGGCAAATCTCGCAGTCGAAATCGGGAGAATGGGTTTTAGGTTGGGGAGATGGGTGTTGTAGAGAGCCCAAGGAcggagaagaaggaggaggcgGATTCAGAGGAATCCTGAGTCTCCACCACATGGAAGATGAAATCCGACAAAGGATGAGGAAGAGGGTATTGCAGAAGCTTCACACAACATTTGGGGGTTCAGATGAAGACAATTACGCCTATGGATTGGACCGCGTGACGGACACAGAGATGTTCTTTCTTGCTTCCATGTATTTCTCTTTCCCTCGAGGAGAAGGAGGGCCAGGTAAGTGTCTTGCCTCAGGGAAGCATTTGTGGCTCTCTGATGCACTCAAATCCACCTCTGATGATTACTGTGTGAGGTCCTTTCTGGCTAAATCGGCCGGAATTCAGACCATTGTTTTGATCCCTACGGATATGGGAGTGGTGGAGCTTGGTTCTGTGAGGATGGTGAGAGAGAGCTTAGAGTTATTGCAGGCAATAAAATCAGTGTTTTCTGTTCAATCTGCATTCCCCAGTAGGGTTATTAAGCCTATTTCACCTTTGCCTGTGGTGGTGAATGAGAAGAGAGATGAGAAAGTAGAAGTAGTAGTTCCAAAGATTTTTGGGCAGGATTTGAATGCACTTAACTCGGGTAGAACCCATTTTAGGGAGAAACTTGCTGTTAGGAAAATGGAGGATAGGCCATGGGCAGGAGGTCACCCTAATGGGAATAGCATTAGGTTCCCAAATGCTCAGAGTAATGGTGGTGGTCTTCATGATCCAAATTGGACAGCTAACCAAGGTGTGAGGCAAGGGCAAGCTAGCCCTGCTGAGATTTTTGCTCCTAAGTCCTTGGCCGGAAATGTGCCGGTTTCGGTGCCGGTGCCGGAGCTAGTTAATGGCAGTGTTAGGAAAGATTTTCGGCTCAACAACTATCAACCACCGCAAAGGCAGGTGCAAATGCAAATTGATTTCTCAGGAGCCACTTCAAGGCCTGGCGTGAGATCAATTTGTGGTGAATCAGAGCTTTCTGATGTTGAGGCAGCTTCATGCAAGGAGGAGCAGCCGGGTGCAACGGCCGATGAAAGGCGGCCGAGGAAACGGGGAAGAAAGCCGGCAAATGGACGGGAGGAACCCTTGAACCACGTGGAAGCCGAGAGGCAAAGGCGTGAGAAGCTGAATCAACGGTTCTACGCACTGCGATCTGTGGTGCCTAATATCTCCAAGATGGACAAAGCTTCCTTGCTGGGAGATGCCATTGCTTATATCAATGAACTTCAGGCCAAACTCAAGATGATGGAATCTGAGAGATTTGGAAGCAGTTCAAGGGATGGATCAGTTGAGTCCCACTCCCACCTTAATCAGAATCAATCAGCTCCTGATGTGGAAATTAAAGCCAATGAAGACGAAGTCATTGTTACAGTGAGCTGCCCTCTCGATGCCCACCCGGTTTCGAAAGTAATCAATGCCTTCAAAGAGGAACAATTAAGTGTTGTTGAATCAAAACTTGCTGCTGCAAATGATACTGTTTTCCATACATTTGTGATCAAATCACAAGGATCTGAGCAGTTGACAAAGGAGAAACTGATGGCTGCATTTTCCCATGAATCCAACTCTTTGCAACCATTGTCATCAGCTTAA 2046 0.4677 MRNVFVLGESNDGSAPKMRDPAELDVCLMNNEASLDYRHAPDGERVRLEVRLVEKERKKKKKPQIEVGLGGMLWNEDERAMVSAVLGTQAFDYLLNNSVSNENLLMAVGSDENLQNKLSDLVDRPNVSNFSWNYAIFWQISQSKSGEWVLGWGDGCCREPKDGEEGGGGFRGILSLHHMEDEIRQRMRKRVLQKLHTTFGGSDEDNYAYGLDRVTDTEMFFLASMYFSFPRGEGGPGKCLASGKHLWLSDALKSTSDDYCVRSFLAKSAGIQTIVLIPTDMGVVELGSVRMVRESLELLQAIKSVFSVQSAFPSRVIKPISPLPVVVNEKRDEKVEVVVPKIFGQDLNALNSGRTHFREKLAVRKMEDRPWAGGHPNGNSIRFPNAQSNGGGLHDPNWTANQGVRQGQASPAEIFAPKSLAGNVPVSVPVPELVNGSVRKDFRLNNYQPPQRQVQMQIDFSGATSRPGVRSICGESELSDVEAASCKEEQPGATADERRPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRSVVPNISKMDKASLLGDAIAYINELQAKLKMMESERFGSSSRDGSVESHSHLNQNQSAPDVEIKANEDEVIVTVSCPLDAHPVSKVINAFKEEQLSVVESKLAAANDTVFHTFVIKSQGSEQLTKEKLMAAFSHESNSLQPLSSA 681
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g1163 681 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 511 573 IPR036638 GO:0046983
Sto6g1163 681 PANTHER MYC 65 673 IPR045084 GO:0003700|GO:0006355
Sto6g1163 681 MobiDBLite consensus disorder prediction 572 593 - -
Sto6g1163 681 PANTHER ABA-INDUCIBLE BHLH-TYPE TRANSCRIPTION FACTOR 65 673 - -
Sto6g1163 681 MobiDBLite consensus disorder prediction 491 523 - -
Sto6g1163 681 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 114 306 IPR025610 -
Sto6g1163 681 Gene3D - 505 573 IPR036638 GO:0046983
Sto6g1163 681 MobiDBLite consensus disorder prediction 380 406 - -
Sto6g1163 681 MobiDBLite consensus disorder prediction 480 523 - -
Sto6g1163 681 CDD bHLH_AtAIB_like 509 572 - -
Sto6g1163 681 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 512 561 IPR011598 GO:0046983
Sto6g1163 681 Pfam Helix-loop-helix DNA-binding domain 516 562 IPR011598 GO:0046983
Sto6g1163 681 MobiDBLite consensus disorder prediction 369 406 - -
Sto6g1163 681 SMART finulus 518 567 IPR011598 GO:0046983
Sto6g1163 681 MobiDBLite consensus disorder prediction 579 593 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto6g1163 Sto-Chr6 11161776 11171288 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto6g1163 67 681 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G01260 51.314 0.0 570
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Sto6g1163 bHLH-MYC_N 6.3e-55 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto6g1163 - - zju:107423649 810.446
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto6g1163 6 11161776 11171288 Sto6g1163 6 11161776 11171288 ECH