Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g1161 ATGGATACGTCGTCCGATCGCCGGTGCAAGCGAAATGCCGGTCCAAAGTGGCGATGCTCCGTGGCGGCATCGCCGGGAGAATCGTACTGCGAGAAGCACTTGGCGCAGAGGAAGAATCACAGCCAGAAACTCAGAATTAACACTAACAAAGAGGCCGAGATGGAGAGACATGATAATACGATGTCCAGGAAAAGGAAGAATGCTTCGGTGAGCAGTAATGGATTGGAGCGGGAAGCGGATGATTCCGAGTTTAATCGGAAATCGGTCTCCAAGAGGAAGAAATTGATTGATAATCGAAGTGCGGATAACTCCATGACATCAGCGTTGAGGGTGAATTCCGGTGAAAACTGTAGTTCCGGCGAAGAGCGGGAGCGTAATTGTTCTTCACCGGAGAAATCATCCATGGTTACGGAATTATACGGAAAAACCAAGGAGGGTGGAAGTTTGATGTGTCATCAATGCCAGCGGAATGATAAGAGTGGTGTTGTCTTCTGCTCAAATTGTGACAGAAAACGCTACTGCTATGAATGTCTCAGGAAGTGGTACCCTGGAAAAACAAGGGAGGAAATTGAGAATGCAtgcccattttgttgtggtaaTTGCAATTGCAAAGCTTGCTTGCGGGAGGTTCCAGTACTAAGGTATCCAGAAGTAGATGACAATGTCAAATTGGAACGACTCCTGTACTTACTATATAAAGCTTTGCCTGTTCTTAGGCATATTCATATGAAGCAGAGCTCTGAACTAGAGATTGAAGCTAAAATACGAGGTACTCAACTGCAAGAAATTGACATAACAAGAACGAAGTTAGATGTACGTGAGCGACTATACTGTGACAATTGCAATACATCTATAGTTGGATTCTACCGAAGCTGTCCCAACTCCAACTGCTCTTATGACCTATGTCTTACCTGCTGTGAAGAGCTCAGAAATGGTCGCCAACCTGGAGGCTTAGAAGCTGGAAGATCTCATGAATATTGTGTAGAGAAAGATTGGAACCAAGATTCTATAAGGACTCAAAGGGAAAGATGTGGCTGGGAAAGCCAATTAGCACCTACTGTTCTTGATTTTCATACTGATGGAACCTCTCCATTTCCTGAATGGCGAGCCAATGGCGATGGTAACATTCCATGTCCTCCAAAACAATATGGAGGTTGTGGCACTGCATTGCTAGAATTGAGACGCATTTTTAAAGCTGATTGGGTAACTAAGCTGTTAAAGAATGCAGAGGATCTCACTAGAGGCTACACACAACTGGATGTTGATCTTTCTGACAAGTGCTCTTTATGCCTGCCAAATTTGGTTGAagggaaaattaattatgatgtCAGGCAGGCAGCACTGAGGGATGATGGCcaagataattttttatacaGCCCAAATGCCCTAGACCTGTCTGATATTGAAATTGAGCATTTCCAGAGGCACTGGATGAGGGGAGAACCTGTGATTGTGAGAAATGTTCTGGACAAGACATCTGGCCTTAGTTGGGAACCAATGGTTATGTGGAGGGCTTTCAGAGAAACCGGTACAAGGGTGAAGTTCAAAGAGGAAATACGTAGTGTAAAGGCCATTGATTGCTGGGATTGGTGTGAGGTAGAGATCAATATTCACCAATTTTTTCAAGGCTACCTAGAGGGTCGAATGCATAGAAATTGTTGGCCAGAAATGTTGAAATTAAAAGATTGGCCTTCATCAACCTTGTTTGAAGAGCGTTTGCCCAGGCATGGAGCTGAATTCTTTACATCACTTCCCTACAGGGATTACACTGATCCGAAATCAGGTCTTCTGAATTTTGCCAGTAAACTTCCTGATGGCTTGTTGAAGCCAGATTTGGGACCCAAGACCTATATTGCTTATGGATTTTCTGACGAGCTTGGTAGAGGTGATTCAGTGACAAAGCTGCATTGTGATGTGTCTGATGCGGTAATTTCTGTACCATGGAATCCTTTTGATTTGAATTTTTACAGAAAACCAGATGGTGTCAATGTACTGACACACACAACCAAGGTGAATATAAGCACTTGGCAGCAAGAAAGAATAACAAAACTGCAGAAGGAATATGCAAAAGAAGATATGCGTGAACTTTATTGTGAAGCACTTAGTGATGTTGATGGGAGTGGAAACTGCACTGCCACTGGCAGAGTTATTGCGGAAGACGGCGTTAGTTTAATATCAACTGAAGTTTCCGATCATGCCAAGACTTTGGGGCAGGATCATGAACAGGTTCAATCGACAAGTAACTTAGCctcaggtcataggagcaataAAAAGGACAGAGTGGTGACTGATCTTCTAGACAACGTGTCTGATGATCTGGAGTCCCAAGAATCAAAACAAGGCCAGGTAAAAGATTCTGTAGAAACTAATAATGGAGCCTCAGTTGTCCTTGGTGGTGCTGTTTGGGATATTTTTCGTCGGCAAGATGTGCCAAAGCTAATAGAGTACTTAAGAAAGCACAAGAAGGAATTCCGTCATATCGGGAACGATCCTGTAAATTCTGTTATACATCCCATTCATGATCAGACTCTTTTCTTAAATGAGAAGCATAAGAAACAACTGAAACAGGAGTTCAATGTTGAACCCTGGACTTTTGAGCAACACCTTGGTGAGGCTGTTTTTATTCCTGCAGGATGTCCTCATCAAGTGAAAAAGATGACTCTTTATGGTGTAAGTTGGGCTGTTAGAGAAATCAATAGACTTTCGAAGGCTACTGAAAGTGGAGGCTGTCTTGGATTTGGACCAGAAGGGGGCGCTTTGTTTTTAATATCATATGGCAAAAGTGGAGGATTTTGTATGGGATTAGGATCTGAAGGAACGCGGTGTTTGATATATGGAAGTGGAGGTTGTCTTGGATTTGGACCAGAAGGGGGCGCTTTGTTTTTAATATCATATGGCAAAAGTGGAGGATTTTGTATGGGATTAGGACCTGAAGGAACGCGGTGTTTGATATATGGAAGTGGAGGCTTTCTTGGATTTGGACCAGAAGGGGGTGCTTTGTTTTTAATATCATATGGCAAAAGTGGAGGATTTTGTATGGGATTAGGACCTGAAGGAACGCGGTGTTTGATATATGGAAGTGGAGGCTGTATTGGATTTGGACCAGAAGGGGGCGctttatttttaatatcataTGGCAAAAGTGGAGGATTTTGTATGGGATTAGGACCTGAAGGAACGCGGTGTTTGATATATGGAAGTGGAGGTTGTCTTGGATTTGGACCAGAAGGGGGCGCTTTGTTTTTAATATCATATGGCAAAAGTGGAGGATTTTGTATGGGATTAGGACCTGAAGGAACGCGGTGTTTGATATATGGAAGTGGAGGCTGTCTTGGATTTGGACCAGATGGGGGCGCTTTGTTTTTAATATCATATGGCAGAAGTGGAGGTTGTCTTGGATTCGGATCAGAAGGGGGCGCTTTGTTTTTAATATCATGGTTAAGAGAAGTATAA 3453 0.4228 MDTSSDRRCKRNAGPKWRCSVAASPGESYCEKHLAQRKNHSQKLRINTNKEAEMERHDNTMSRKRKNASVSSNGLEREADDSEFNRKSVSKRKKLIDNRSADNSMTSALRVNSGENCSSGEERERNCSSPEKSSMVTELYGKTKEGGSLMCHQCQRNDKSGVVFCSNCDRKRYCYECLRKWYPGKTREEIENACPFCCGNCNCKACLREVPVLRYPEVDDNVKLERLLYLLYKALPVLRHIHMKQSSELEIEAKIRGTQLQEIDITRTKLDVRERLYCDNCNTSIVGFYRSCPNSNCSYDLCLTCCEELRNGRQPGGLEAGRSHEYCVEKDWNQDSIRTQRERCGWESQLAPTVLDFHTDGTSPFPEWRANGDGNIPCPPKQYGGCGTALLELRRIFKADWVTKLLKNAEDLTRGYTQLDVDLSDKCSLCLPNLVEGKINYDVRQAALRDDGQDNFLYSPNALDLSDIEIEHFQRHWMRGEPVIVRNVLDKTSGLSWEPMVMWRAFRETGTRVKFKEEIRSVKAIDCWDWCEVEINIHQFFQGYLEGRMHRNCWPEMLKLKDWPSSTLFEERLPRHGAEFFTSLPYRDYTDPKSGLLNFASKLPDGLLKPDLGPKTYIAYGFSDELGRGDSVTKLHCDVSDAVISVPWNPFDLNFYRKPDGVNVLTHTTKVNISTWQQERITKLQKEYAKEDMRELYCEALSDVDGSGNCTATGRVIAEDGVSLISTEVSDHAKTLGQDHEQVQSTSNLASGHRSNKKDRVVTDLLDNVSDDLESQESKQGQVKDSVETNNGASVVLGGAVWDIFRRQDVPKLIEYLRKHKKEFRHIGNDPVNSVIHPIHDQTLFLNEKHKKQLKQEFNVEPWTFEQHLGEAVFIPAGCPHQVKKMTLYGVSWAVREINRLSKATESGGCLGFGPEGGALFLISYGKSGGFCMGLGSEGTRCLIYGSGGCLGFGPEGGALFLISYGKSGGFCMGLGPEGTRCLIYGSGGFLGFGPEGGALFLISYGKSGGFCMGLGPEGTRCLIYGSGGCIGFGPEGGALFLISYGKSGGFCMGLGPEGTRCLIYGSGGCLGFGPEGGALFLISYGKSGGFCMGLGPEGTRCLIYGSGGCLGFGPDGGALFLISYGRSGGCLGFGSEGGALFLISWLREV 1150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g1161 1150 ProSiteProfiles Zinc finger RING-type profile. 151 197 IPR001841 -
Sto6g1161 1150 Pfam WRC 7 43 IPR014977 -
Sto6g1161 1150 Coils Coil 47 67 - -
Sto6g1161 1150 Gene3D Cupin 461 888 - -
Sto6g1161 1150 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 16 643 IPR045109 GO:0032454|GO:0033169
Sto6g1161 1150 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 738 885 IPR045109 GO:0032454|GO:0033169
Sto6g1161 1150 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 660 764 IPR045109 GO:0032454|GO:0033169
Sto6g1161 1150 ProSiteProfiles WRC domain profile. 3 52 IPR014977 -
Sto6g1161 1150 Pfam JmjC domain, hydroxylase 798 885 IPR003347 -
Sto6g1161 1150 SMART cupin_9 573 910 IPR003347 -
Sto6g1161 1150 PANTHER TRANSCRIPTION FACTOR JUMONJI (JMJC) DOMAIN-CONTAINING PROTEIN 660 764 - -
Sto6g1161 1150 PANTHER TRANSCRIPTION FACTOR JUMONJI (JMJC) DOMAIN-CONTAINING PROTEIN 16 643 - -
Sto6g1161 1150 PANTHER TRANSCRIPTION FACTOR JUMONJI (JMJC) DOMAIN-CONTAINING PROTEIN 738 885 - -
Sto6g1161 1150 SUPERFAMILY Clavaminate synthase-like 469 893 - -
Sto6g1161 1150 ProSiteProfiles JmjC domain profile. 592 910 IPR003347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto6g1161 Sto-Chr6 11131040 11144080 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Sto6g1161 JmjC 1.7e-12 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto6g1161 K15601 - mnt:21406261 973.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto6g1161 6 11131040 11144080 Sto6g1161 6 11131040 11144080 ECH