Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g1146 ATGGAGCAATAtactgccaccaccaccactaccacTAAGATGTACAATCTCTTCGTGAAGCTTTTGGATggaaaaaccctaaccctaaaatttCAATCTCCTACCCTTCACGCCGATTCCATTAGGGATCGCCTTTTCGAAGTTACCAGAATCCCCACACAACACCAGCGCCTCGTCACCGGCGTCCGAGACCTAAACGGCAACGAATCTGTGATATCTTGCTCACCGGAAGGCGGCGATGCGTTCCCCACCGTTCATCTTCTGCTACGGCTCGCCGGTGGCAAGGGAGGGTTCGGGTCGCTTTTGCGTGGTGCGGCCACGAAGGCTGGACAGAAGAAGACGAACAACTTCGATGCTTGTAGAGATATGAGTGGTCGAAGGTTAAGACACGTGAACGCCGAGAAGAGGCTGGAGGAGTGGAAGGCGGAGGAGGCAGAGAGGAAGCTGGAGAAGGCGGCGGAAGAGTTTCTAAAGAAGCAAGCGAAGAAGGGTAAGAAGGGTGTGGGTGATGGCGAGGCGCACAAGTATGTGGCGAAATATAGGGAGGTGTCTGAGCGGTGCACGGCTGAGGTTGCAGAGTCGGTGAAGGAGGCTTTGATGTCTATGAATGGGAAGAGAAAAGTTTCAGATGCTGGGAAAGACGGAGCAGATGCAAAGAAGTTGAAGATATGGTTGGGAAAGAGGACATTAAATGAAAGTGATACTGATGATTCCGATGATGAAAATGATGACgaaagagaaaatgagaaaTCAATTGTAACAAATAATGGGAACGAATCAGACTCATATAAGGCTGAAGGAAGTCCAGGTTCAGTTACTGGTGGGAAACAGGATGGAGAATGTTCTGTTCTGGGCTCAAGTGAAAGTTGCtctgaagaagagaaagagactgTTCGAGAGGGCAAATTGGATTTTAGCGAATGTCTGATTTTTGACTCAAATCTAGCTGCACCAGGCAATGTGGTTGAACCTGTGATATGTGATGAGATGGAAAAGGGTTCTGCTATGCCCTTTTTAGAGCCTGCAATTCTAGGAATTGTTGCTGAAGAAGCTGGAAAGCAGGACTTCAGTGGAGCTGTATCAACTCATGAAGAAATCTCCACCAGTGCCAGTGTTTCAGAAGTGAAGGAACCTTTGGATTTTGATGCAATTAGTTCAGCTGCAGAACTTGAGGCTCTTGGCATGGAGAGATTGAAGTCTGAACTGCAGTCACGTGGATTAAAATGTGGAGGTACGTTGCAAGAGCGTGCTGGCAGGCTTTTTCTCTTAAAATCAACTCCGTTAGATAAACTGCCTAagaaactctttgcaaaaaaatga 1320 0.4402 MEQYTATTTTTTKMYNLFVKLLDGKTLTLKFQSPTLHADSIRDRLFEVTRIPTQHQRLVTGVRDLNGNESVISCSPEGGDAFPTVHLLLRLAGGKGGFGSLLRGAATKAGQKKTNNFDACRDMSGRRLRHVNAEKRLEEWKAEEAERKLEKAAEEFLKKQAKKGKKGVGDGEAHKYVAKYREVSERCTAEVAESVKEALMSMNGKRKVSDAGKDGADAKKLKIWLGKRTLNESDTDDSDDENDDERENEKSIVTNNGNESDSYKAEGSPGSVTGGKQDGECSVLGSSESCSEEEKETVREGKLDFSECLIFDSNLAAPGNVVEPVICDEMEKGSAMPFLEPAILGIVAEEAGKQDFSGAVSTHEEISTSASVSEVKEPLDFDAISSAAELEALGMERLKSELQSRGLKCGGTLQERAGRLFLLKSTPLDKLPKKLFAKK 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g1146 439 Coils Coil 128 162 - -
Sto6g1146 439 MobiDBLite consensus disorder prediction 231 295 - -
Sto6g1146 439 Gene3D - 7 96 - -
Sto6g1146 439 PANTHER SPLICING FACTOR SF3A-RELATED 14 438 - -
Sto6g1146 439 Pfam Replication stress response SDE2 C-terminal 364 438 - -
Sto6g1146 439 PANTHER REPLICATION STRESS RESPONSE REGULATOR SDE2 14 438 - -
Sto6g1146 439 MobiDBLite consensus disorder prediction 253 267 - -
Sto6g1146 439 Pfam Silencing defective 2 N-terminal ubiquitin domain 15 161 IPR024974 -
Sto6g1146 439 SUPERFAMILY Ubiquitin-like 11 95 IPR029071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto6g1146 Sto-Chr6 11008725 11011242 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto6g1146 379 438 C2H2 Transcription Factor Family AT5G06160 55.000 2.74e-11 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto6g1146 K25059 - gmx:100781694 393.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto6g1146 6 11008725 11011242 Sto6g1146 6 11008725 11011242 ECH