Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g1144 ATGAATGCTAAGGGACATAGATTTGTGAGTTTAAGAATCACAACTGCTGCTTCTATTGTGATATTTCTACTGCCTCAGTtatctatttctttctttcaacgAAGATTTGAGGATTGGAGTTCAGAATCATCTTTTAGTACTGAGCAGCAAAATTCTACTGACAATAGATATAATGGAAAAAAATTCAGACCAAGTGTAAGCGCTGTTTTAGATACTATCAGAAGAAGAATTGATAGTGGGTCTGAGAAGATAAAAAGCTTCAGAAAATCCTCAACTGTCCATCCCGTAAATGATGGATCACCGAAAGAATTGGCTCCTAAAAGCAAAATTCTTGATCCACAGGGGCCTCTCCTTCAGAAATGGAACAAAATATTTGTTATCACGTGTGTGATAGCAGTCGCTGTGGATCCACTGTTCTTTTACATCCCAGTCATTGACGACTCAAGGACATGCCTTAAGTtagatggaaacttgcagattATTGCTTCTGTTCTTCGTACATTCTTTGATCTTTTCTACATTCTTCGCATAATCTTTCAGTTTCGGACTGGGTTTATCGCTCCTTCTTCTCGAGTATTTGGAAGGGGTGAGCTGGTTAATGATCGTTGGGAAATAATGAAAAGATACATATATTCGTACTTCATAATTGACATACTATCAATTCTTCCTCTTCCACAGGTGGTTGTTTTAGCCATCATTCCAAGCCTAAAACACAAAGTTCCATTTGTTGCGAAGGACTTATTGACATATATGGTCATAGGCCAGTATGTGCCAAGACTCCTGCGGATTTACCCATTATTCAAAGAAGTAACAAGAACTTCTGGCATACTCACAGAGACAGCTTGGGCTGGAGCTGCGTATAATCTTTTTCTCTATATGCTAGCTAGTCATGCAGTTGGTGCTTTTTGGTACCTGCTTTCTGTAGAATCAGAGCTTCGGTGCTGGCGCAAAGCATTGAAGAATGCTACAATGGATCATGAGTCATACATGAGTTGTGATACTGATAATTTCTATCAAACAGCTGTTTCACTTCTCAATAGTTCTTGCACAATCATTGATTCTGATGGCAATACAAACTCAACATTCAATTATGGAATATTCGCCCCTGCTCTAGAATCTGATGTGGTAAAGTCAACAACAGATTTTCTTCAGAAGTTCTTTTTCTGCTTTTGGTGGGGTTTGCGCAATTTAAGTTCTCTTGGACAAAACCTTGCAACAAGTACTTATGTTTTGGAGATAATCTTTGCTATATTTATTGCCATCTTTGGATTGGTTTTGTTCTCATTGCTTATTGGAAATATGCAGAAATATCTGCAATCTACAACTGTTAGAGTTGAAGAGATGAGAGTCAAGAGAAGAGATGCAGAGCAATGGATGTCCCACCGAATGCTACCTGAGAACTTAAGAGAAAGAATTAGACGGTACGAACATTACAAATGGCAGGAAAATCGGGGTGTCGAAGAGGAAACATTAATTCGCAATCTTCCAAAAGATCTCAGAAGGGACATAAAGCGTCATCTTTGCTTGGCTTTACTTAAAAAGGTGCCAATGTTTGATATAATGGATGAACAGTTGTTGGATGCAATGTGTGATAGATTGAAGCCAATTCTTTATACAGAGAAGAGCTACGTTGTTCGTGAAGGAGATCCGGTTGATGAAATGGTGTTCATTATGCGAGGGAACCTTGCTACTATGACAACAAATGGAGGAAGAACTGGTTTCTTTAACTCCTCTGTTCTTAAAGCTGGTGATTTCTGTGGAGAGGAGCTTCTAACATGGGCCTTGGACCCCAATTCCTCTACAAATCTTCCCATTTCGACTAGAACGGTAGAAACTATATCCGAAGTTGAAGCTTTTGCTCTCATGGCTGATGACTTGAAGTTTGTCGCTTCTCAATTCTATTCCTTGCAATGGAAGACATGGGGTGCCTGTTTCATCCAAGCAGCTTGGCGGCGCCACATCAGAAAGAAGACAGAGAGGTCATTGCGCGAAGCGGAAGGAAGGCTACAAGATGCTCTGGAAAATGAGAATGGATCATCATCAACGCCAAGTCTTGGTGCTACCATTTATGCTTCAAGATTCGCTGCCAATGCATTACGAAACCTTCGTCAAAATGCAAGCGAACGCAACAGCAGAAGATTACTGCCTCTTATGCCTCAGAAGCCAGCAGAGCCTGATTTCACTTCTCAAAATCACTAG 2199 0.3956 MNAKGHRFVSLRITTAASIVIFLLPQLSISFFQRRFEDWSSESSFSTEQQNSTDNRYNGKKFRPSVSAVLDTIRRRIDSGSEKIKSFRKSSTVHPVNDGSPKELAPKSKILDPQGPLLQKWNKIFVITCVIAVAVDPLFFYIPVIDDSRTCLKLDGNLQIIASVLRTFFDLFYILRIIFQFRTGFIAPSSRVFGRGELVNDRWEIMKRYIYSYFIIDILSILPLPQVVVLAIIPSLKHKVPFVAKDLLTYMVIGQYVPRLLRIYPLFKEVTRTSGILTETAWAGAAYNLFLYMLASHAVGAFWYLLSVESELRCWRKALKNATMDHESYMSCDTDNFYQTAVSLLNSSCTIIDSDGNTNSTFNYGIFAPALESDVVKSTTDFLQKFFFCFWWGLRNLSSLGQNLATSTYVLEIIFAIFIAIFGLVLFSLLIGNMQKYLQSTTVRVEEMRVKRRDAEQWMSHRMLPENLRERIRRYEHYKWQENRGVEEETLIRNLPKDLRRDIKRHLCLALLKKVPMFDIMDEQLLDAMCDRLKPILYTEKSYVVREGDPVDEMVFIMRGNLATMTTNGGRTGFFNSSVLKAGDFCGEELLTWALDPNSSTNLPISTRTVETISEVEAFALMADDLKFVASQFYSLQWKTWGACFIQAAWRRHIRKKTERSLREAEGRLQDALENENGSSSTPSLGATIYASRFAANALRNLRQNASERNSRRLLPLMPQKPAEPDFTSQNH 732
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g1144 732 Pfam Cyclic nucleotide-binding domain 538 627 IPR000595 -
Sto6g1144 732 SUPERFAMILY cAMP-binding domain-like 446 637 IPR018490 -
Sto6g1144 732 SUPERFAMILY Voltage-gated potassium channels 112 439 - -
Sto6g1144 732 MobiDBLite consensus disorder prediction 710 732 - -
Sto6g1144 732 Gene3D Jelly Rolls 515 634 IPR014710 -
Sto6g1144 732 Gene3D Helix hairpin bin 444 508 - -
Sto6g1144 732 ProSiteProfiles cAMP/cGMP binding motif profile. 517 601 IPR000595 -
Sto6g1144 732 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 31 730 - -
Sto6g1144 732 Coils Coil 655 675 - -
Sto6g1144 732 CDD CAP_ED 517 626 IPR000595 -
Sto6g1144 732 Gene3D - 123 441 - -
Sto6g1144 732 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL-LIKE PROTEIN 31 730 - -
Sto6g1144 732 SMART cnmp_10 517 648 IPR000595 -
Sto6g1144 732 Pfam Ion transport protein 121 445 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto6g1144 Sto-Chr6 10980197 10985160 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto6g1144 35 731 Ion Channels AT5G53130 63.497 0.0 904
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto6g1144 K05391 - gmx:100797784 1036.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto6g1144 6 10980197 10985160 Sto6g1144 6 10980197 10985160 ECH