Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g1142 ATGCCCACAAAGCTCTTATCGCAGCTCCACCTTCTCCCAGTTTCTTCCTTCGCTCGTTTCTCTTCCATGAAGATGGGAGCCCCAATTTCAGCGTCCCGGGCTATCCCCATTCTCTCTCGGGTCTTCCCATTGAGGCTCAAGTACTTGGGCTTGGAGTCTCGCGCCGTTCGGAATGAGCTACTCGGCGGACGGCGATTTTCGTCTCGGTCATTTCCGGGAAGGACTGGGTCGAGGTCCGAGTTGAGTCAGGGGAGTAGTAATAGAGAAAGGGTTAGGGCTTCCAAGAGTTTGATTGAGGATGAGGCTGAACTCAGTGACTGGGTTGATGAATTGAGGACCGATTCTTACCGTGGTCGATTAACTAGCGAAGACGATGATGACTCGAATATGGAGAGAGGTCGAAGTGTTGGTAGGGGGAGGGGATCCATGCCGATGAAAGGGAGGAGGGAGAATGGCTCGGAGAGATTTGGTGAGTCACCTCGGAGGAGAACTCGGGACTCTGTTGAGTCATTCTCGAGGAATTCTGGAATGAGCCGGAGATTTGAAGATAATGGTAATAAGGAAGATGAGTTCTTCTCACGGAGAATCGACAGGGTTTCCAAAGGTAGGAATGTGAAATCTCAACTGGGGAAAAGAAGTGGCGAGGAGCTGAGGAGAGGGAGAAACGATGCGAAGAGAAAGTCATATTCGGCGAGCGAGGATGATGTTGATGAAGATGAACTGAAGGCAAATAAGCTCCGGGGCACCATTGGAGATTTCATAAGTGAAGAAGATAGTGACGCTGAAGAAAATGGGGATGACGATGGTGATTCaaatatattaaagaagagtagAAGTTCTTTGTTTGGTCAAGAAAAGGAGTTGAAGCAGAGCAGTGCGCCACGAGAATCTCCTGGTAGATCTGATTCTTATTTAAGTGAGACCAGATTTGATCAATGTTCAGTCTCACCATTGTCACTGAAAGGAGTCAAGGATGCTGGATACGAGAACATGACTGTTGTGCAGGAGGCAACTCTTCCAGTTATACTCCAAGGTAAGGATGTCCTAGCCAAGGCAAAAACAGGCACTGGAAAAACTGTAGCCTTTTTGCTTCCATCAATTGAAGTCGTTGTAAAGTCACCTCCAACTGATCGTGACCATAAGCGACCTCCAATTCTTGTGCTTGTTATATGCCCAACTCGAGAGCTTGCAAGTCAAGCTGCTGCAGAAGCCACTAAACTACTGAAATACCATCCTTCCATTGGTGTTCAAGTTGTGATTGGAGGGACAAGACTTGCTTTAGAACAGAAGCGCATGCAAGCAAACCCTTGCCAGATCCTTGTTGCTACACCTGGAAGGCTTAGAGACCATATTGAGAATACTGCTGGTTTTGCAACTAGGCTGATGGGTGTGAAAGTCCTTGTGCTTGATGAAGCTGATCATTTACTAGACATGGGATTTCGCAAAGACATTGAGAGGATAATTGCTGCAGTTCCTAAACAGCGACAAACACTTCTGTTTTCTGCCACTGTTCCAGAAGAGGTCCGACAAATCTCTCATATTGCATTGAGAAGAGATCATGAATTTATCAATACAGTTCAAGAGGGTAGTGAAGAGACACATTCACAGGTTCAACAGATGCACTTAGTTGCCCCATTAGATAAGCATTTCTCCCTACTTTATGCTCTTCTAAAAGAGCATATTGCAGATGATGTCGACTATAAGGTTCTTGTTTTCTGCACAACTGCTATGGTCACAAGACTGGTTGCTGACCTTCTTGGTGAGTTGAACTTGAATGTGAGAGAAATCCATTCAAGAAAGCCTCAGAGCTATAGAACCAGGGTCTCCGAAGAATTTCGGAAGTCGAAGGGACTTATACTTGTTACATCAGACGTATCTGCACGTGGAGTTGATTATCCAGATGTCACTCTTGTTGTACAGATGGGTCTACCAGCTGAGAGAGAACAGTATATACACCGATTGGGTCGAACAGGGCGAAAAGGTAAAGAAGGGCAAGGCATATTGCTATTGGCTCCTTGGGAAGAATTCTTTTTATCTTCTGTAAAGGATCTGCCAATTGCAAAAGCTCCAGTACCTTCAGTTGATCCGGACACAAGGAAAAAGGTAGAAAGGGCTCTTTCCCTAGTAGAAATGAAGAACAAAGAAGCAGCATATCAGTCATGGCTTGGTTACTACAATTCCAACAAGAAAGTGGGGAAAGACAAGTATAGGTTAGTGGAGCTTGCAAATGAGTTCAGTAGAAGTATGGGGCTTGATAACCCTCCAGCTATTCCTAAGCTAGTCCTTGGCAAGATGGGCCTTAAAAATATACCTGGTTTACGTTCCAAATAG 2331 0.4522 MPTKLLSQLHLLPVSSFARFSSMKMGAPISASRAIPILSRVFPLRLKYLGLESRAVRNELLGGRRFSSRSFPGRTGSRSELSQGSSNRERVRASKSLIEDEAELSDWVDELRTDSYRGRLTSEDDDDSNMERGRSVGRGRGSMPMKGRRENGSERFGESPRRRTRDSVESFSRNSGMSRRFEDNGNKEDEFFSRRIDRVSKGRNVKSQLGKRSGEELRRGRNDAKRKSYSASEDDVDEDELKANKLRGTIGDFISEEDSDAEENGDDDGDSNILKKSRSSLFGQEKELKQSSAPRESPGRSDSYLSETRFDQCSVSPLSLKGVKDAGYENMTVVQEATLPVILQGKDVLAKAKTGTGKTVAFLLPSIEVVVKSPPTDRDHKRPPILVLVICPTRELASQAAAEATKLLKYHPSIGVQVVIGGTRLALEQKRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLDMGFRKDIERIIAAVPKQRQTLLFSATVPEEVRQISHIALRRDHEFINTVQEGSEETHSQVQQMHLVAPLDKHFSLLYALLKEHIADDVDYKVLVFCTTAMVTRLVADLLGELNLNVREIHSRKPQSYRTRVSEEFRKSKGLILVTSDVSARGVDYPDVTLVVQMGLPAEREQYIHRLGRTGRKGKEGQGILLLAPWEEFFLSSVKDLPIAKAPVPSVDPDTRKKVERALSLVEMKNKEAAYQSWLGYYNSNKKVGKDKYRLVELANEFSRSMGLDNPPAIPKLVLGKMGLKNIPGLRSK 776
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g1142 776 MobiDBLite consensus disorder prediction 294 308 - -
Sto6g1142 776 SMART helicmild6 580 661 IPR001650 -
Sto6g1142 776 SMART ultradead3 327 540 IPR014001 -
Sto6g1142 776 CDD DEADc_MSS116 315 524 - -
Sto6g1142 776 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 25 87 177 - -
Sto6g1142 776 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 25 275 774 - -
Sto6g1142 776 MobiDBLite consensus disorder prediction 118 185 - -
Sto6g1142 776 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 385 677 IPR027417 -
Sto6g1142 776 MobiDBLite consensus disorder prediction 202 240 - -
Sto6g1142 776 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 339 522 IPR014001 -
Sto6g1142 776 PANTHER RNA HELICASE 275 774 - -
Sto6g1142 776 PANTHER RNA HELICASE 87 177 - -
Sto6g1142 776 MobiDBLite consensus disorder prediction 143 169 - -
Sto6g1142 776 MobiDBLite consensus disorder prediction 252 308 - -
Sto6g1142 776 CDD SF2_C_DEAD 538 670 - -
Sto6g1142 776 MobiDBLite consensus disorder prediction 70 91 - -
Sto6g1142 776 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 308 336 IPR014014 GO:0003724
Sto6g1142 776 MobiDBLite consensus disorder prediction 66 94 - -
Sto6g1142 776 MobiDBLite consensus disorder prediction 118 134 - -
Sto6g1142 776 Pfam Helicase conserved C-terminal domain 552 661 IPR001650 -
Sto6g1142 776 Pfam DEAD/DEAH box helicase 333 510 IPR011545 GO:0003676|GO:0005524
Sto6g1142 776 Gene3D - 531 755 IPR027417 -
Sto6g1142 776 Gene3D - 270 523 IPR027417 -
Sto6g1142 776 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 556 707 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto6g1142 Sto-Chr6 10945610 10951483 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto6g1142 308 689 Eukaryotic Initiation Factors Gene Family AT3G19760 27.638 2.71e-46 169
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto6g1142 - - zju:107423621 1070.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto6g1142 6 10945610 10951483 Sto6g1142 6 10945610 10951483 ECH