Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g1114 ATGAAGGAATCAAAGATCGTCACAAATAAGCTCGTGAAAACCGGGTTTCCCGATGGGGCTCCGAGAGTTATTCGGATCACCGTCACCGACCACTACGCCACTGACACTTCGAGCGACGAAGACGCCGGCGCCGACCACCAACACCGTCACAAAAGCGCGAGGAGGCTCGTGAACGAAGTCAGAATGGAGAAATGCTCTGATTTCATGGCGAACAGAGAGGCTCAAGGAGGTACGAATTTCTCTTCCAAGCATCATAATAGTAGGCCAAAGCAATGTAGAAACAACTCGGGTAAGGTTCGACCCGGGAAAACCGACCCGACCGGGAAGAAGTACCGCGGGGTTCGGCGGCGGGAGTGGGGGCGGTGGGCGGCGGAGATCAGAGATCCGGTGCGGCGGGAGAGAGTGTGGCTGGGGACGTTCGACACGGCGGAGGAAGCCGCTCTGGTGTACGACAAGGCGGCGATTCGTCTCCGAGGTTGTGACGCTCTCACGAACATCCTGAAACCGCCGCCAAAGAACCCCGAACCCGTCGAGGAATCCGAGGAAGGGTCGACCAACAATTTGGGGGTTTCGGAGAATGATTCAGTGAAAGAGCCTCACAATAGCCGCGAGTCTTCTCCGACCTCTGTTTTGAGGTTTCAGTCCGTAGAAGAAGAACCCAAAGCAGAGgccagagaagaagaagaacaagaacaagTGTACTTGGAAGCCGATGGAAACTTTTCTTTCATTGATTCCCCATCTTTTAATCCCTTTTCGGATTTGGAACAACCTCTTCCAATGTTCTTCGACGAAACCATAGTGCCCCACCTGGTCTCAAACGAGGATTTGGGGGACTTTCCGTTTGGTCTGGATCCAGATTTCAAGTCGTGTATATGGGATATGGACAGTTACTTTGAAGAACAAGACAACATTGAAAAATGGATTTTTCTTGTGTAA 939 0.5069 MKESKIVTNKLVKTGFPDGAPRVIRITVTDHYATDTSSDEDAGADHQHRHKSARRLVNEVRMEKCSDFMANREAQGGTNFSSKHHNSRPKQCRNNSGKVRPGKTDPTGKKYRGVRRREWGRWAAEIRDPVRRERVWLGTFDTAEEAALVYDKAAIRLRGCDALTNILKPPPKNPEPVEESEEGSTNNLGVSENDSVKEPHNSRESSPTSVLRFQSVEEEPKAEAREEEEQEQVYLEADGNFSFIDSPSFNPFSDLEQPLPMFFDETIVPHLVSNEDLGDFPFGLDPDFKSCIWDMDSYFEEQDNIEKWIFLV 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g1114 312 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR CRF5-RELATED 3 301 - -
Sto6g1114 312 ProSiteProfiles AP2/ERF domain profile. 110 167 IPR001471 GO:0003700|GO:0006355
Sto6g1114 312 SUPERFAMILY DNA-binding domain 110 166 IPR016177 GO:0003677
Sto6g1114 312 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 3 301 - -
Sto6g1114 312 Gene3D AP2/ERF domain 109 167 IPR036955 GO:0003700|GO:0006355
Sto6g1114 312 Pfam AP2 domain 110 159 IPR001471 GO:0003700|GO:0006355
Sto6g1114 312 PRINTS Ethylene responsive element binding protein signature 111 122 IPR001471 GO:0003700|GO:0006355
Sto6g1114 312 PRINTS Ethylene responsive element binding protein signature 133 149 IPR001471 GO:0003700|GO:0006355
Sto6g1114 312 SMART rav1_2 110 175 IPR001471 GO:0003700|GO:0006355
Sto6g1114 312 MobiDBLite consensus disorder prediction 35 54 - -
Sto6g1114 312 CDD AP2 109 165 IPR001471 GO:0003700|GO:0006355
Sto6g1114 312 MobiDBLite consensus disorder prediction 180 195 - -
Sto6g1114 312 MobiDBLite consensus disorder prediction 166 229 - -
Sto6g1114 312 MobiDBLite consensus disorder prediction 74 110 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto6g1114 Sto-Chr6 10692161 10693186 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto6g1114 13 220 AP2-EREBP Transcription Factor Family AT4G27950 45.933 5.41e-46 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Sto6g1114 AP2 8.8e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto6g1114 - - pop:7492755 209.149
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto6g1114 6 10692161 10693186 Sto6g1114 6 10692161 10693186 ECH
Sto6g1114 6 10692161 10693186 Sto1g1074 1 13400462 13401418 ECH