Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g1081 ATGtcctcctccaccaccgccgccgccgccgccgccgccgaaCCGCCAATTGCCTCCGTGACCGCCACCACCGATGCCGCCTCCTTCCTCACCAACTTCGGCGTCGAATCCGTATTCACCAAGGCACTCattctcctcttcctcttcttcttctccatccgcGTCGGCTTCGTCGTGGTCCGCCGCATCCGTGAGAACCGTGCCGACCGCATCAATCGGCACCTCCTCAACCACGACACGCGCCACCACCACGAGCCCCCGGCCGAAAGCAACGTTAACGCCAGTACCGACGCAGTGGTGATTGACTTCGACGCGGCTATTAGCGCGTACCCGAGTTTCGTGTACGGCGTGGCGGCGGGGGCCGAGGGGGAGGGCGCGTGCAGCAGCGCGGGAGGGGGCGCGTGCGTAAACGACACGACGTGTCCGATATGTATAAACGAGTACGAGGAGTCGGAGGTAATGAGAATAATGCCTCATTGTGGGCATTACTTTCACCTGAACTGTATCGACGAATGGCTCAAAATCAATTGGTCGTGTCCTGTGTGTCGTCACTCTCCCTTGCAACAAGACCAGACGCCATCAtgcagctag 591 0.5161 MSSSTTAAAAAAAEPPIASVTATTDAASFLTNFGVESVFTKALILLFLFFFSIRVGFVVVRRIRENRADRINRHLLNHDTRHHHEPPAESNVNASTDAVVIDFDAAISAYPSFVYGVAAGAEGEGACSSAGGGACVNDTTCPICINEYEESEVMRIMPHCGHYFHLNCIDEWLKINWSCPVCRHSPLQQDQTPSCS 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g1081 196 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 42 192 IPR045899 -
Sto6g1081 196 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 107 192 IPR013083 -
Sto6g1081 196 SMART ring_2 141 182 IPR001841 -
Sto6g1081 196 SUPERFAMILY RING/U-box 137 189 - -
Sto6g1081 196 ProSiteProfiles Zinc finger RING-type profile. 141 183 IPR001841 -
Sto6g1081 196 Pfam Ring finger domain 140 183 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto6g1081 Sto-Chr6 10507275 10507865 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto6g1081 101 187 C3H Transcription Factor Family AT2G35910 37.931 1.29e-16 73.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto6g1081 - - egt:105963853 105.531