Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g1046 ATGGGAGGTTGCTGCTGCACTGCCAGAAAGCCTCATCTGGATGGAACACCAGTTTATATCTATTGTCCACCAGCTTTGGAAGAGCGTGAATCTTTAACTTCTAATGATGGCACAGCTGCTTCACTCACTGCTGGATTGCTCGTTGGTTTGGACCTCCAGGGATCAACACCTGATACTTACCGGCCTCCTCCTACACCTTTGCCGTATAACATGGTATTGGGATGTCCAGCTTCAACTGATTCCGAGTCAGGCAGAGAAACAATTAGTGGTAGTAGTTTTGCAACATTATTGACATGTGAAGATATTGAAGACTCGGACTGCAAAGTTCAAGCTAATTCTGCACCTCTATCTCCAAGGAAGCTTGAACTATCAAAATCAAATGAATCTCATGTGTTAATGACAGAGGAAGAGGATTGTTGCCCAATTTGTCTTGAAGAATATGATGTTGAGAATCCTAAAACTCTGACAAGGTGTGAACACCACTTTCACCTGTCTTGCATTCTTGAGTGGATGGAACGAAGTGACTCCTGTCCTATATGTGATCAGGAGATGATCTTTGACCAGAGACTGAATTAG 576 0.434 MGGCCCTARKPHLDGTPVYIYCPPALEERESLTSNDGTAASLTAGLLVGLDLQGSTPDTYRPPPTPLPYNMVLGCPASTDSESGRETISGSSFATLLTCEDIEDSDCKVQANSAPLSPRKLELSKSNESHVLMTEEEDCCPICLEEYDVENPKTLTRCEHHFHLSCILEWMERSDSCPICDQEMIFDQRLN 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g1046 191 Pfam Ring finger domain 139 180 IPR001841 -
Sto6g1046 191 SMART ring_2 140 180 IPR001841 -
Sto6g1046 191 SUPERFAMILY RING/U-box 134 187 - -
Sto6g1046 191 ProSiteProfiles Zinc finger RING-type profile. 140 181 IPR001841 -
Sto6g1046 191 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 117 188 IPR013083 -
Sto6g1046 191 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RHB1A-RELATED 1 190 - -
Sto6g1046 191 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 1 190 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto6g1046 Sto-Chr6 10204004 10207629 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto6g1046 1 191 C3H Transcription Factor Family AT4G00335 58.115 3.68e-78 230
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto6g1046 - - gmx:100792561 333.183