Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g1043 ATGCTTGGTAATGGAAAACCAGTGGACTTGTATAAGCTCTTCATGGTTGTGAAGGacaacggtggatatgatgCAGTCTCAAAAAACCGTTTGTGGGATCTGGTATCTGAGTGCAGTCTGGAGTTCAACAGAGTTGATTTTGGCAGGCATTTGATGGAGATGCATGCAGAACTTGAAGGACTCTTATCAGATTATACTGATGAAGAGATGGGAGATGAATTGTGTCAACATTCTGAGTTTAACACTGAAATTAAACACCAAGATGGTGAGGAATTCTGTGGTGCTAAGGGAGTTAATACTGTGACTACAGAGTTTGGAGGGATAAAAAAAGTTCAGAAGGGAGGATTTATTGATTTGAATATACCAGGCCACGAGAACAATGAACCTAGTACGGAAAATTTGTGCATTAAGGATGAGGTAAACAAAATGCCCGGACTATCAGATGGGGGCAAGAGATGTGACAATGACGATGATGATGCTTTGTTATTGGATCCATCCAGTGTTAATATAGAGAGCTTTGATCgtttcttttctttttctaggaTGATGAGTGATTACAAAGTGGAGATGATTAATGATGGAATGCAAGAGTTTTATGTGCATTTTCATGGACCCAGTGACAGTCCTTATCATGGAGGTGTGTGGAAAGTAAGAGTTGAGCTGCCAGATGCTTATCCTTATAAGTCACCTTCCATAGGCTTTGTCAATAAGATCTATCATCCAAATGTTGATGAGATGTCAGGTTCAGTTTGTCTAGATGTTATCAATCAAACCTGGAGCCCCATGTTTGATCTTGTTAATGTATTTGAGGTGTTTCTACCGCAACTTCTTCTGTATCCAAATCCATCTGACCCTCTGAATGGAGAAGCTGCAGCTTTAATGATGCGTGACCGAGCTACTTATGACCAAAGGGTTAAAGAATACTGTGAGAAGTATGCAAAGCCTGAGGATATAGGAGAAGCTGCAGAAGAGAAATCGAGCGATGAAGAGCTGAGTGAAGATGAATATGATTCAAGTGATGAACAGGTGGCTGGTAAAGCAGACCCTTAG 1050 0.3933 MLGNGKPVDLYKLFMVVKDNGGYDAVSKNRLWDLVSECSLEFNRVDFGRHLMEMHAELEGLLSDYTDEEMGDELCQHSEFNTEIKHQDGEEFCGAKGVNTVTTEFGGIKKVQKGGFIDLNIPGHENNEPSTENLCIKDEVNKMPGLSDGGKRCDNDDDDALLLDPSSVNIESFDRFFSFSRMMSDYKVEMINDGMQEFYVHFHGPSDSPYHGGVWKVRVELPDAYPYKSPSIGFVNKIYHPNVDEMSGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALMMRDRATYDQRVKEYCEKYAKPEDIGEAAEEKSSDEELSEDEYDSSDEQVAGKADP 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g1043 349 Pfam ARID/BRIGHT DNA binding domain 4 37 IPR001606 GO:0003677
Sto6g1043 349 SUPERFAMILY ARID-like 4 37 IPR036431 GO:0003677
Sto6g1043 349 Pfam Ubiquitin-conjugating enzyme 183 308 IPR000608 -
Sto6g1043 349 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 239 255 IPR023313 -
Sto6g1043 349 Gene3D - 1 65 IPR036431 GO:0003677
Sto6g1043 349 SUPERFAMILY UBC-like 180 314 IPR016135 -
Sto6g1043 349 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 179 349 - -
Sto6g1043 349 MobiDBLite consensus disorder prediction 322 338 - -
Sto6g1043 349 ProSiteProfiles ARID domain profile. 1 70 IPR001606 GO:0003677
Sto6g1043 349 PANTHER UBIQUITIN-CONJUGATING ENZYME E2-23 KDA-LIKE 179 349 - -
Sto6g1043 349 SMART ubc_7 170 314 - -
Sto6g1043 349 CDD UBCc 182 309 IPR000608 -
Sto6g1043 349 MobiDBLite consensus disorder prediction 316 349 - -
Sto6g1043 349 CDD ARID 4 37 - -
Sto6g1043 349 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 165 314 IPR000608 -
Sto6g1043 349 Gene3D Ubiquitin Conjugating Enzyme 178 327 IPR016135 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto6g1043 Sto-Chr6 10172668 10184778 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto6g1043 191 316 Miscellaneous Gene Families AT3G17000 25.000 7.43e-06 45.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Sto6g1043 UQ_con 1.5e-37 CL0208
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto6g1043 K10576 - gmx:100804969 326.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto6g1043 6 10172668 10184778 Sto6g1043 6 10172668 10184778 ECH