Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g1012 atggCATTCACAGGAACTTTGGATAAATGCAATGCTTGTGATAAGACTGTTTATGTGGTGGACATGTTGTCCCTTGAAGGGATGAGCAGCTACTCCTCAATGGATGGTGTCCTCTATTGCAAACCACATTTTGAACAGCTTTTCAAGGAATCTGGCAATTTTAGCAAAAACTTCCACACAGCAAAGTCTTCTGAGAAATCAAATGACATGAGCAAGAACTCAAATAGCAGACTGTCTTCCTTGTTCAGTGGAACCCAAGACAAATGTGCAGTTTGCTCAAAAACAGTATATCCACTGGAAAAGGTGAGCCTGGAAGGAGAATGCTACCACAAGACTTGCTTTAGGTGTGCTCATGCAGGGTGCCCTCTCACACACTCATCCTATGCTGCTCTTGATGGAGTGCTGTATTGCAGGCACCATTTTGCTCAGCTTTTCATGGAGAAGGGCAATTACCATCATGTTCTTCAGGCTGCTGCAGCTAACAAGAAGAATAGCACTCCTCCTAATGAGCCTGTAGATGATGAGTCACAGCCAGAAGAAGAACCTTCTCAAGACCACACAACACAAGATTCttaa 576 0.434 MAFTGTLDKCNACDKTVYVVDMLSLEGMSSYSSMDGVLYCKPHFEQLFKESGNFSKNFHTAKSSEKSNDMSKNSNSRLSSLFSGTQDKCAVCSKTVYPLEKVSLEGECYHKTCFRCAHAGCPLTHSSYAALDGVLYCRHHFAQLFMEKGNYHHVLQAAAANKKNSTPPNEPVDDESQPEEEPSQDHTTQDS 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g1012 191 PANTHER GATA TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN 28 189 - -
Sto6g1012 191 PANTHER GATA TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN 1 28 - -
Sto6g1012 191 Pfam LIM domain 89 144 IPR001781 -
Sto6g1012 191 PANTHER OS06G0237300 PROTEIN 1 28 IPR045268 GO:0051015
Sto6g1012 191 PANTHER OS06G0237300 PROTEIN 28 189 IPR045268 GO:0051015
Sto6g1012 191 SMART lim_4 88 140 IPR001781 -
Sto6g1012 191 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 115 154 - -
Sto6g1012 191 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 81 114 - -
Sto6g1012 191 MobiDBLite consensus disorder prediction 159 191 - -
Sto6g1012 191 Gene3D Cysteine Rich Protein 83 153 - -
Sto6g1012 191 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 27 58 - -
Sto6g1012 191 ProSiteProfiles LIM domain profile. 87 147 IPR001781 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto6g1012 Sto-Chr6 9937933 9938917 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Sto6g1012 LIM 1.2e-10 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto6g1012 - K09377 mnt:21389989 300.827