Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g1007 ATGGTTACAACAGGTGGTACTAGCTTGAAAGATGATATCATGCGCTTATATCAGCCAGTTCATTTACTAGTTGGAACTCCTGGAAGAATATTAGATCTTGCAAAGAAGGGTGTTTGCGTCCTCAAAGACTGTACTATGCTCGTTATGGATGAGGCGGATAAGCTTCTATCCCCAGAGTTCCAACCTTCGATAGAGCAACTGATTCATTTCCTGCCTCCTAACCGTCAAATCCTGATGTTTTCAGCTACGTTTCCTGTTACTGTAAAGGACTTCAAAGATAGATATCTTCAAAAACCATATATCATTAACCTTATGGATGAGTTAACTCTAAAAGGTATTACTCAATTTTATGCATTCGTGGAAGAGAGACAGAAAGTTCACTGCCTGAATACTCTTTTCTCTAAGCTGCAAATAAATCAGTCAATTATCTTCTGCAATTCGGTGAATCGGGTTGAACTCCTTGCCAAGAAAATCACAGAACTTGGGTATTCATGTTTCTATATTCATGCAAAGATGTTGCAAGATCATCGTAACAGAGTATTTCATGACTTTCGCAATGGTGCATGCAGGAATCTTGTTTGTACTGATCTCTTTACTAGAGGGATAGACATTCAAGCAGTCAATGTggttattaattttgattttcccAAGAACTCGGAAACTTATTTGCACAGGGTTGGTCGTTCAGGGAGGTTTGGGCACCTTGGTTTAGCAGTTAATTTAATCACTTATGAGGATCGCTTTAATTTATATAGGATTGAGCAAGAACTTGGCACTGAAATAAAGCAGATTCCACCTCACATTGATCAGGCAATTTATTGCCGATGA 828 0.3792 MVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLAKKGVCVLKDCTMLVMDEADKLLSPEFQPSIEQLIHFLPPNRQILMFSATFPVTVKDFKDRYLQKPYIINLMDELTLKGITQFYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHIDQAIYCR 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g1007 275 Pfam DEAD/DEAH box helicase 3 90 IPR011545 GO:0003676|GO:0005524
Sto6g1007 275 CDD SF2_C_DEAD 113 242 - -
Sto6g1007 275 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 48 56 IPR000629 -
Sto6g1007 275 Gene3D - 1 109 IPR027417 -
Sto6g1007 275 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 112 272 IPR001650 -
Sto6g1007 275 Pfam Helicase conserved C-terminal domain 127 233 IPR001650 -
Sto6g1007 275 Gene3D - 110 275 IPR027417 -
Sto6g1007 275 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 1 275 - -
Sto6g1007 275 SMART helicmild6 152 233 IPR001650 -
Sto6g1007 275 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1 102 IPR014001 -
Sto6g1007 275 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 12 1 275 - -
Sto6g1007 275 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 3 255 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto6g1007 Sto-Chr6 9907854 9910332 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto6g1007 5 268 Eukaryotic Initiation Factors Gene Family AT3G19760 38.722 2.28e-67 213
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto6g1007 K12614 - rcu:8261850 551.592
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto6g1007 6 9907854 9910332 Sto6g1007 6 9907854 9910332 ECH