Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g1003 ATGGATCGGGGGGACCAAATGGCGTTATCTGGGTCTGCATCATACTATATGCAGAGAGGATTAGCTGGTTCTGCAGCGCAGCCTGAGCTACATGGTGCTCCTTCTGGGGTGCCATCTGGGGAACCTGTCAAAAGGAAGAGAGGAAGGCCCAGGAAATATGGTCCAGATGGAACTGTGTCATTGGCATTGACTCCACCATCGTCTAGTCATCCTGGAAGTGGAACTGTAACACAAAGCCAAAAGCGGGGTAGAGGGCGCCCGCCTGGGACTGGCAAGAAACAGCAATTGGCTTCTCTTGGTGAATTGATGTCTGGTTCGGCTGGAATGGGTTTCACTCCTCATATCATCACCATTGCAATTGGAGAAGATATTGCATCGAAAATAATGGCATTTTCCCAGCAGGGGCCTAGAGCTGTATGCGTATTGTCAGCCAATGGTGCTGTCTCTAATGTGACTCTCCGTCAGCCTTCAACTTTGGGTGGCTCTGTCACATATGAGGGGCGTTATGAGATATTGTGCCTATCTGGCTCTTACTTGCTTAATGATAGTGGTGGCTCTCGCAATCGAACTGGGGGACTAAGTGTGTCTCTTGCTAGTCCTGAGGGTAAAATTATAGGTGGGGGAGTTGGCGGAATGCTTATAGCAGCATGCCCCGTTCAGGTGATAGTTGGGAGCTTTCTATGGGGTGGATCAAAGACAAAGAACAAGAAAAAGGATGTTGAAGAAGTTGCTGTTGAGTCAGATCATCAGGCAGTTCATAATCCAATTGCAATGAATAACATTATGGCTAATCAAAATCTCACCCCAACATCTTCTATTGGTGCCTGGCCTGCATCTCGTGCGATGGATATGCGTAATTCCCATGTTGACATTGATTTAATGCGGGGGTGA 891 0.4804 MDRGDQMALSGSASYYMQRGLAGSAAQPELHGAPSGVPSGEPVKRKRGRPRKYGPDGTVSLALTPPSSSHPGSGTVTQSQKRGRGRPPGTGKKQQLASLGELMSGSAGMGFTPHIITIAIGEDIASKIMAFSQQGPRAVCVLSANGAVSNVTLRQPSTLGGSVTYEGRYEILCLSGSYLLNDSGGSRNRTGGLSVSLASPEGKIIGGGVGGMLIAACPVQVIVGSFLWGGSKTKNKKKDVEEVAVESDHQAVHNPIAMNNIMANQNLTPTSSIGAWPASRAMDMRNSHVDIDLMRG 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g1003 296 MobiDBLite consensus disorder prediction 61 84 - -
Sto6g1003 296 Pfam Plants and Prokaryotes Conserved (PCC) domain 113 226 IPR005175 -
Sto6g1003 296 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 29 270 IPR039605 GO:0003680
Sto6g1003 296 ProSiteProfiles PPC domain profile profile. 107 250 IPR005175 -
Sto6g1003 296 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 29 270 - -
Sto6g1003 296 MobiDBLite consensus disorder prediction 24 95 - -
Sto6g1003 296 SUPERFAMILY AF0104/ALDC/Ptd012-like 111 228 - -
Sto6g1003 296 Gene3D - 113 253 - -
Sto6g1003 296 SMART AT_hook_2 81 93 IPR017956 GO:0003677
Sto6g1003 296 SMART AT_hook_2 44 56 IPR017956 GO:0003677
Sto6g1003 296 CDD DUF296 112 226 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto6g1003 Sto-Chr6 9883990 9889444 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto6g1003 43 296 AT-hook Motif Nuclear Localized (AHL) Family AT3G61310 54.167 8.18e-81 246
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto6g1003 - - gmx:100783475 421.779