Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g0966 ATGGAAGCCAGAGAAGGAATCAGTTCAGGGGTTACGGTGATAGGAGCAGAAGCTCCATCAGCCTATCACGTGGCTCCGAGGAGTGAGGCTCCAAGCCAGGGTCATGTTTCTGACGTAGCAGCAGCACCAAATGTTGGTGCCTCACCGGTGAGTGTAGGGTTGGATGGAACAGTAGTGAAGAAGAAACGGGGTAGACCGAGGAAATATGGGCCGGATGGGTCGGTGGCTATGGCATTGTCGCCATTGCCAATCTCATCTTCGGCTCCACTTTCTAATGATTTCTCAGCTGGGAAGAGGGGCAAATCTGGGGGCGTAGAGTACAAGAAGCATAAAAAACTTGGGTTGGAGCATTTAGGCGATTTAAATGGATGCTCCATTGGTACAAATTTCATGCCTCATATAATTACTGTCAATACTGGCGAGGATATTACAATGAAAGTTATATCTTTTTCTCAACAAGGACCCAGAGCTATATGCATCCTATCTGCTAATGGTGTTATTTCAAATGTTACACTTCGTCAACCTGATTCTTCTGGGGGTACTTTGACCTATGAGGGTCGTTTTGAGATACTTTCGTTGTCTGGATCATTCATGCCTACTGACAACCAAGGAACAAGAAGCAGGTCAGGTGGAATGAGTGTCTCTCTGGCAAGCCCTGATGGTCGTGTTGTCGGTGGTGGAGTTGCTGGTCTTCTTATTGCTGCCAGTCCTGTTCAGGTGGTAGTGGGAAGTTTCCTACCAAGCAACCAGCAAGAACATAAACCAAAAAAGTCCAAATCTGATTACTCACCGGCTGCTACAGTTACTCCGGCCATTGCAGTGTCCTCTGCGCCACCCTCAAGTAATGCAGAGAAAGAAGACGGCATGGGCGGTGGACATGTACTGCAAAATTCCGGAAACCTTAATTCCAACTTGACTTCTCCCTCAACGTTTCGACGAGAAAACTGGGTGAATATGCACTCTATGCCGGACTCGAGACAGTCGGCTACTGATATTAACATATCCTTGCCGGATAGTTAA 1020 0.4735 MEAREGISSGVTVIGAEAPSAYHVAPRSEAPSQGHVSDVAAAPNVGASPVSVGLDGTVVKKKRGRPRKYGPDGSVAMALSPLPISSSAPLSNDFSAGKRGKSGGVEYKKHKKLGLEHLGDLNGCSIGTNFMPHIITVNTGEDITMKVISFSQQGPRAICILSANGVISNVTLRQPDSSGGTLTYEGRFEILSLSGSFMPTDNQGTRSRSGGMSVSLASPDGRVVGGGVAGLLIAASPVQVVVGSFLPSNQQEHKPKKSKSDYSPAATVTPAIAVSSAPPSSNAEKEDGMGGGHVLQNSGNLNSNLTSPSTFRRENWVNMHSMPDSRQSATDINISLPDS 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g0966 339 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 1 338 IPR039605 GO:0003680
Sto6g0966 339 Pfam Plants and Prokaryotes Conserved (PCC) domain 132 245 IPR005175 -
Sto6g0966 339 MobiDBLite consensus disorder prediction 272 309 - -
Sto6g0966 339 MobiDBLite consensus disorder prediction 295 309 - -
Sto6g0966 339 ProSiteProfiles PPC domain profile profile. 127 271 IPR005175 -
Sto6g0966 339 CDD DUF296 132 245 IPR005175 -
Sto6g0966 339 Gene3D - 132 262 - -
Sto6g0966 339 SUPERFAMILY AF0104/ALDC/Ptd012-like 130 251 - -
Sto6g0966 339 PANTHER AT HOOK MOTIF DNA-BINDING FAMILY PROTEIN 1 338 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto6g0966 Sto-Chr6 9597698 9604608 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto6g0966 10 277 AT-hook Motif Nuclear Localized (AHL) Family AT4G12080 58.472 2.80e-101 300
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto6g0966 - - gmx:100796830 518.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto6g0966 6 9597698 9604608 Sto1g1661 1 24729965 24736149 CCT
Sto6g0966 6 9597698 9604608 Sto6g0966 6 9597698 9604608 ECH